Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1827 ATGGATGAAGGAGGATCAAGGGGGAGTGCCAAGGAAGATGGCGGCGCTGATGTCCGGTACCGGGGTGTGCGACGCCGGCCTTGGGGGAAGTTCGCGGCGGAGATTCGTGACTCGACGAGGCAAGGGCAGAGGGTGTGGCTTGGAACTTTCAATACGGCTGAGGAAGCAGCCAGAGCATATGACAGAGCTGCTTATGGAATGAGAGGTTCATTTGCAATCCTTAACTTCCCAAATGAGTATAATATGTCAGGTACTTCTAGTGCTAGCGCTACTAATGCTTCATCATCCTCATCCTCTTCAAGGCATGCAAATGTTGGAAGAAGTAATGAGCAACAAGGAAGACAAGTGTTTGAGTTTGAGTACTATGATGACAAATTGCTTGAGGAGCTTCTTGATTATGAAGAGAAAAATAAAAAAAAGTGA 423 0.4728 MDEGGSRGSAKEDGGADVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYGMRGSFAILNFPNEYNMSGTSSASATNASSSSSSSRHANVGRSNEQQGRQVFEFEYYDDKLLEELLDYEEKNKKK* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1827 140 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Lja5g1827 140 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lja5g1827 140 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Lja5g1827 140 PANTHER DNA-BINDING DOMAIN 18 135 IPR044808 GO:0003700|GO:0009873
Lja5g1827 140 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 18 135 - -
Lja5g1827 140 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Lja5g1827 140 MobiDBLite consensus disorder prediction 82 111 - -
Lja5g1827 140 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Lja5g1827 140 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Lja5g1827 140 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Lja5g1827 140 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1827 Lja-Chr5 21435964 21436386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1827 19 138 AP2-EREBP Transcription Factor Family AT3G23230 65.323 1.21e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1827 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1827 - - gmx:100775830 161.77