Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1826 ATGGAGGACCACCACAAGGGGAAGCATGGCAAGGATCAGGAGAAGGCAAGGGAGGAAGTACGTTACCGAGGTGTCCGGCGACGGCCGTGGGGAAAGTACGCGGCGGAGATAAGAGATCCCTCGAAGCAAGGGACAAGGCTCTGGCTCGGGACGTTTGACACGGCTGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCTTTTAACTTAAGGGGCCATCTTGCAATCCTCAATTTCCCAAGTGAGTACTATTCAAAAATAAGGGGCTCACCACCATATCCACCTCACTTAGCATCATCTTCTTCCTCTTCTCATGCCATGGCAAGTGGAAGTTCTCCTGGTGCACCTCAGAGGCATGTTTTTGAGTTCGAGTGTTTGGATGATAAGGTGTTGGAGGAACTTCTTGAGTCAGAGGAGCAGAAGAAGAAAAAGAAGTGA 435 0.5034 MEDHHKGKHGKDQEKAREEVRYRGVRRRPWGKYAAEIRDPSKQGTRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSKIRGSPPYPPHLASSSSSSHAMASGSSPGAPQRHVFEFECLDDKVLEELLESEEQKKKKK* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1826 144 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Lja5g1826 144 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Lja5g1826 144 MobiDBLite consensus disorder prediction 94 110 - -
Lja5g1826 144 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Lja5g1826 144 PANTHER DNA-BINDING DOMAIN 1 138 IPR044808 GO:0003700|GO:0009873
Lja5g1826 144 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Lja5g1826 144 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Lja5g1826 144 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Lja5g1826 144 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lja5g1826 144 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Lja5g1826 144 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g1826 144 MobiDBLite consensus disorder prediction 87 114 - -
Lja5g1826 144 PANTHER ETHYLENE RESPONSE FACTOR 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1826 Lja-Chr5 21403498 21404078 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1826 19 141 AP2-EREBP Transcription Factor Family AT3G23230 69.919 8.20e-54 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1826 AP2 3.9e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1826 - - gmx:100793703 176.407