Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1824 ATGGATTCACCATTAACCTTCAATTCTTCCAATTCAGAATTCTCCTCTGAATCCTCATCTTTTGAAACCAATTACCTTCCTTTCAACGAGAATGACCCGGAGGAGATGCTTCTGTATGGCATGATCGCCGACGGCGCAAACAGCCTCCACCACCACCACCACCACCAGATGTTTGATGGTAGGGCTATGTCAATTAAAGAAGAGGAGGTGAGTTCGGAGGAGAATGGCTGCGGCAGTAGCCCGAGGAAGGAGAAGTCGTACCGAGGTGTAAGGAGGCGGCCGTGGGGGAAGTTTGCAGCTGAGATAAGGGACTCAACTAGGAATGGCGTGAGGGTGTGGCTGGGGACGTTTGATAGCGCGGAAGCCGCCGCGTTGGCTTATGATCAAGCTGCTTTTGCCATGAGGGGTTCTTCGGCTATACTCAATTTTCCAGTTGATGTTGTGAGGGAATCGCTTAGTGAGATGAATTGTGGTGATTATGGCTCTGAAGAAGGGGGTTCCCCTGTTGTTGCTCTGAAGAGGAAGCACTCTCTGAGGAGGAAAATTGGTGTTAAGAAGAGCAAGGAGAGTGATGGTAGGAGGAGTGGGATGGAGATGAACAATGCTGTTGTGTTTGAGGATCTTGGTTCTGATTACTTGGAACAATTATTGATGTCCTCTGATCAAGTTCCTTGTAATTGGTGA 684 0.4868 MDSPLTFNSSNSEFSSESSSFETNYLPFNENDPEEMLLYGMIADGANSLHHHHHHQMFDGRAMSIKEEEVSSEENGCGSSPRKEKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFAMRGSSAILNFPVDVVRESLSEMNCGDYGSEEGGSPVVALKRKHSLRRKIGVKKSKESDGRRSGMEMNNAVVFEDLGSDYLEQLLMSSDQVPCNW* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1824 227 PANTHER DNA-BINDING DOMAIN 21 219 IPR044808 GO:0003700|GO:0009873
Lja5g1824 227 Gene3D AP2/ERF domain 85 147 IPR036955 GO:0003700|GO:0006355
Lja5g1824 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 21 219 - -
Lja5g1824 227 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Lja5g1824 227 CDD AP2 85 146 IPR001471 GO:0003700|GO:0006355
Lja5g1824 227 SUPERFAMILY DNA-binding domain 86 146 IPR016177 GO:0003677
Lja5g1824 227 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Lja5g1824 227 PRINTS Ethylene responsive element binding protein signature 126 146 IPR001471 GO:0003700|GO:0006355
Lja5g1824 227 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Lja5g1824 227 Pfam AP2 domain 86 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1824 Lja-Chr5 21298412 21299790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1824 26 221 AP2-EREBP Transcription Factor Family AT3G23240 59.694 3.68e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1824 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1824 K14516 - gmx:100790598 246.128