Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1798 ATGAGCTCTGAGGTTTCAGGTGAAGATCATCATGGTGATCATCAAAATGAAGACACTGCAGGAACAAAACGCTCTTATGATTGTACATTCTGCAAGAGAGGCTTCACAAATGCTCAGGCTTTAGGGGGTCACATGAATATTCATAGGAAGGACAGAGCCAAGGGAAAACAAGAACAAACCCCAAACCCTTTTTCTTCCATTCAAGGAAAATTCACCAACTATGAACAATCCTATTCCTCTATGACCCTTCCTTTTACTTCTGAATTTCAAAACAAACCCTTAAGCCATTACTCCATTCGGGAGCCTCAGAGGAATCGTGACATGTATTTTCATCCTCCACCAACCCAACTTGCACCTCTTCATCTGTGTGAGTTTCAGAACAAAAAGTCTGATCAGCCTGTGCATTTCAACCAAGGGTTTTGGGGTGCTGATTTGAGTCTCCAAACTGGTTCAAATCATGTGGGTCATAATGCTAGTCAAGTTAGGAGAGGAAATCAGAAAGATAGTGAAGTGGACTTGGAGCTCAGGCTTGGCCATGATCCATACTGA 549 0.4262 MSSEVSGEDHHGDHQNEDTAGTKRSYDCTFCKRGFTNAQALGGHMNIHRKDRAKGKQEQTPNPFSSIQGKFTNYEQSYSSMTLPFTSEFQNKPLSHYSIREPQRNRDMYFHPPPTQLAPLHLCEFQNKKSDQPVHFNQGFWGADLSLQTGSNHVGHNASQVRRGNQKDSEVDLELRLGHDPY* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1798 182 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Lja5g1798 182 MobiDBLite consensus disorder prediction 151 170 - -
Lja5g1798 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Lja5g1798 182 MobiDBLite consensus disorder prediction 1 21 - -
Lja5g1798 182 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 181 - -
Lja5g1798 182 Gene3D Classic Zinc Finger 5 80 - -
Lja5g1798 182 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g1798 182 PANTHER OS07G0101800 PROTEIN 6 181 - -
Lja5g1798 182 SUPERFAMILY beta-beta-alpha zinc fingers 23 52 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1798 Lja-Chr5 20826009 20827244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1798 2 58 C2H2 Transcription Factor Family AT3G09290 56.140 2.08e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g1798 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1798 - - lja:Lj2g3v2234090.1 390.578