Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1793 ATGAGAGCTAAGAGTTTGATAAGGAAGAGGAAGTATAGCATTAGAGGGAAATTGAGGAATATGATCAAGTGCATAGGTTTCAAGGAGCTGTTAAGTGTGGATAAAATGAGTACTCATTCATCAGAGTCTCTGGCAACCAGAGACTATTCAGCGAGTGGTGGTTTTTCATCTCGTCCCGGTGAAAACGATACAAAGGTGGATAATAGCAACATTGAGGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTGAACTATGAGGAAGCTAGAGCCTTGTTGGGAAGACTTGAGTACCAGAGAGGTAATATTGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTCCTTCCCAAGATTAAATTTTCTATATCTAGAAGATTGGAACCCAATAGACGCAATTCACAAAGTGATGCAGTGCCTCCTATGTCAATACATGCTGTTAGTTTACTCCTTGAAGCTATTTTTCTCAAAGCTAAATCACTGCAGACTCTAGGAAGGTTTCAAGATGCTGCCCAATCTTGCAGAACAATTTTAGACACTGTTGAATCAGCATTACCAGAAGGGTGGCCTGAAAACTTTGTTTCAGACTGCAAATTACATGAGACCCTAACAAATGCTGTAGAACTGCTTCCTGAGTTGTGGAATCTTGCTGGTTCTCCTCAAGATGTTATTTCCTCGTTCCGGCGAGCCTTGCTTTATCGTTGGAATCTCCATGCAGAAGCCGTTGCGAGAATTCAGAAGGAATTTGCTTTGTTTCTTTTGTATAGTGGTTGTGAAGCAAGTCCTCCTTCTCTCCGCTCGCAGCTGGATGGTTCCTTTGTGCCGATAAACAACTTGGAGGAGGCTGTTCTTCTGCTTCTGATTCTCCTGAGAAAATCAGTTCTTGGAAGCATTTTATGGGACCCTTCAATAATTGACCACCTTTCTTTTGCTCTGAGTGTTTGTGGGGAACTTAAGACTCTGGCTCAACAGGTTGAGGAGTTTCTTCCAGAAACCATGGAGGGAAAAGAAAGATATTACACACTAGCTCTATGTTACTGTGGGGAAGGTGAGAGTATGATTGCTTTGGATCTTTTGAGAAACTCTTTGAGTAATAGAGAGAATTTGGACTGCATACAGGAATTACTTCTAGCTTCGAAAATTTGTGCAGACAACAACGTTTGTGTTGCAGATGGAATCAAATATTCTAGCAAAGCCATTTCTCAGATGAATGGAAAATGCATCCAAATGGTAGCTATTGCAAATTGCTTACTAGGTGTGCTACTGTCAGCAAAATCCAGGTCAGTTTCCTCCGAATTTGAGAAGGCTTCGATGCAGTCTGAAGCACTCAGTGCTCTAGAATCTGCTGAGAGAATGATGAGGGAGAATGATCCATTCATTGTCCATCATCTTTGTGTAGAATATGCCGAGCAGAGGAAATTGGAGTTGGCTTTTTATCATGCAAAGAAACTGATTAAGCTGGAGGGTGGGTCTAGTATTATTGGATATTTACTACTAGCGCGGATTTTATCAGCTCAGAAAAAGTTTTTAGATGCTGAGATTGTCGTTGATGCTGCTCTAGATCAAAGTGGAAGATGGGATCAAGGTGAATTGTTGAGAACTAAAGCTAAACTACGGATTGCGCAAGGAAAATTAAAGAATGCGGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTCCAAAATAAATGTTTAGGTACTGCAAATAAGGTTGTCAAGCGTAAAGGAAACCGTGACAGAAGACTAGAAATGGAAATATGGCATGACTTAGCCAATTTATACTCAAAGTTATCTCAGTGGCATGATGCTGAAGTTTGTCTTGCAAAATCTGAAGCTATTAATCCCTATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTTTGAAGCTAGAGGTCTTCATCAAGAGGCTCTGAGATCATTCAGAAAAGCATTAGATATTGAGCCTAACCATGTGCCAAGTTTGGTATCCACAGCCTGTGCTCTTAGACATTTTGGTGGCCAATCATCTTCAATTGTTAGAAGCCTTCTCAATGATGCACTAAGGCTTGACAGAACAAACCAATCTGCATGGTACAATCTTGGACTGCTCTATAAAGCTGATTTAGGGGCATCAGCACTGGAAGCTGTTGAATGCTTTGAGGCAGCGGTACTTCTTGAAGAATCTTCACCCATTGAACCATTTAGATAA 2202 0.4087 MRAKSLIRKRKYSIRGKLRNMIKCIGFKELLSVDKMSTHSSESLATRDYSASGGFSSRPGENDTKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQRGNIEAALHVFEGIDIAAVLPKIKFSISRRLEPNRRNSQSDAVPPMSIHAVSLLLEAIFLKAKSLQTLGRFQDAAQSCRTILDTVESALPEGWPENFVSDCKLHETLTNAVELLPELWNLAGSPQDVISSFRRALLYRWNLHAEAVARIQKEFALFLLYSGCEASPPSLRSQLDGSFVPINNLEEAVLLLLILLRKSVLGSILWDPSIIDHLSFALSVCGELKTLAQQVEEFLPETMEGKERYYTLALCYCGEGESMIALDLLRNSLSNRENLDCIQELLLASKICADNNVCVADGIKYSSKAISQMNGKCIQMVAIANCLLGVLLSAKSRSVSSEFEKASMQSEALSALESAERMMRENDPFIVHHLCVEYAEQRKLELAFYHAKKLIKLEGGSSIIGYLLLARILSAQKKFLDAEIVVDAALDQSGRWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKCLGTANKVVKRKGNRDRRLEMEIWHDLANLYSKLSQWHDAEVCLAKSEAINPYSASRWHSTGLLFEARGLHQEALRSFRKALDIEPNHVPSLVSTACALRHFGGQSSSIVRSLLNDALRLDRTNQSAWYNLGLLYKADLGASALEAVECFEAAVLLEESSPIEPFR* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1793 733 MobiDBLite consensus disorder prediction 42 68 - -
Lja5g1793 733 PANTHER OS10G0471400 PROTEIN 13 733 - -
Lja5g1793 733 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515
Lja5g1793 733 PANTHER PROTEIN NPG1 13 733 IPR043376 -
Lja5g1793 733 SMART tpr_5 154 187 IPR019734 GO:0005515
Lja5g1793 733 SMART tpr_5 588 621 IPR019734 GO:0005515
Lja5g1793 733 SMART tpr_5 339 372 IPR019734 GO:0005515
Lja5g1793 733 SMART tpr_5 622 655 IPR019734 GO:0005515
Lja5g1793 733 SMART tpr_5 496 529 IPR019734 GO:0005515
Lja5g1793 733 MobiDBLite consensus disorder prediction 42 64 - -
Lja5g1793 733 SUPERFAMILY TPR-like 533 703 IPR011990 GO:0005515
Lja5g1793 733 Gene3D Tetratricopeptide repeat domain 571 730 IPR011990 GO:0005515
Lja5g1793 733 Gene3D Tetratricopeptide repeat domain 280 568 IPR011990 GO:0005515
Lja5g1793 733 SUPERFAMILY TPR-like 442 559 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1793 Lja-Chr5 20759476 20763002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1793 5 733 Calmodulin-binding Proteins AT4G28600 52.949 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1793 K21843 - gmx:100789469 1164.83