Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1777 ATGGGATTCAGATATCTTCGTCTCAAGCTCAAGGTTTTCCGGCTAAAACGGATTCTGCTACGACTTGCAGGCAGGAAGAGAAAGCTATTGCCAGCAAAGAAGCCTTCATGGATGACGCCGGTAACACATGGTTATCGTGTGGTGCAGCATCATGTGATCAGAGATGGCTCTGATGACTCAGACCTTGATTCAGTGGTGGTCCAAAGAGAGCAAATTGATCACACAGAACTGTGGTATTTTGGAATATTTGATGCACTGATTGGAGACAGGGTTACCAAGTACATGCAATCCCATTTATTTGGCAAGAAGCTTCAAGAGGCTCATATAAGGAGAAAAGGTAAAGAAACTCTGAAGAGAGCTTACCTGGGTGTAAGGGCAAAGATCAAACAGGAACAGAAATCAGAAGAGACATCCAGAATGGGTTCAGCATCTGCTATGGTAATCAATGGAGAAAAACTTGTGATAGCCACCATGGGAGATTACAGAACTGTAGTGTGTAGAGATGGCATAGCTTATGAGACAACCAGCACATACAACCAATCAGCCAAAAGACATTGGTCTCGCAGGCTCTTTGCAGGTAATACAGCATATACAAGGCATTTTAGAGGCCCAGAGCTTGTTATCAGAGGTGAAAGCATTGATTCAGATACTGAGTTTTTAATATTAGCAAGCAGTGGCATATGGGAGGTAATGAAGAACCAAGAGGCTGTGAATCTGATCAGTCACATAGAGGATCCACAAGAAGCAGCTGATTGTTTAGCAAAGGAAGCTTTAATTAGAATGAGCAGAAGCAACATTTCATGCTTAATCATTCGTTTTGACTAA 825 0.4242 MGFRYLRLKLKVFRLKRILLRLAGRKRKLLPAKKPSWMTPVTHGYRVVQHHVIRDGSDDSDLDSVVVQREQIDHTELWYFGIFDALIGDRVTKYMQSHLFGKKLQEAHIRRKGKETLKRAYLGVRAKIKQEQKSEETSRMGSASAMVINGEKLVIATMGDYRTVVCRDGIAYETTSTYNQSAKRHWSRRLFAGNTAYTRHFRGPELVIRGESIDSDTEFLILASSGIWEVMKNQEAVNLISHIEDPQEAADCLAKEALIRMSRSNISCLIIRFD* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1777 274 Gene3D - 49 274 IPR036457 -
Lja5g1777 274 SUPERFAMILY PP2C-like 63 274 IPR036457 -
Lja5g1777 274 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 6 273 - -
Lja5g1777 274 SMART PP2C_4 49 271 IPR001932 -
Lja5g1777 274 CDD PP2Cc 79 273 IPR001932 -
Lja5g1777 274 Pfam Protein phosphatase 2C 211 266 IPR001932 -
Lja5g1777 274 Pfam Protein phosphatase 2C 79 177 IPR001932 -
Lja5g1777 274 ProSiteProfiles PPM-type phosphatase domain profile. 42 273 IPR001932 -
Lja5g1777 274 PANTHER ALPHABET, ISOFORM E-RELATED 6 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1777 Lja-Chr5 20443104 20445602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1777 1 273 PP2C-type Phosphatase Gene Family AT3G23360 48.561 1.37e-82 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1777 K19704 - gmx:100785227 372.474