Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1773 ATGGGTCGAAGGAAGATTGAGATTGCACTTGTGAAGGATCCCAACACAAGGCAGGTCACATTCTCCAAGCGTAGATCAGGCTTATTCAAGAAAGCTCATGAGTTGTCCATTTTGTGTGGATCAGAAGTTGCCATTGTTGTGTTTTCTCCAGGGAACAAACCTTACTCCTTTGGCCACCCAAGTGTTGATGCTGTTGCAGCCAAGTTTCTTGATGAAGAGAGCAATCCAAATGATGATTCCCAAGATGGTAGCACTAGTGATGATGACTCTTCTACTGAAGTTGTTGTTGATGTGGAGGAACGGAATCTACAACTTGCTGATGTGATGGCTCAAATTCACAAGGAGGAAAAGAAGGCTAAGGAACTTGATGAGACCTTGAAACAACTCCAAGAGGGTCAAGAATTGGATGATTTGTATGTGGAAGCACGAGGTATGGTGAGAAAGCGTCTCGATGAGTTTGAGGTAGCGGATAGTATGATCCTCCTTTCACAGAAACCTGTGGAGGGAATCACGGCAACAAAACAAGTTGCTAGAAAAAGAAGAAGAAAGAATTGA 555 0.4342 MGRRKIEIALVKDPNTRQVTFSKRRSGLFKKAHELSILCGSEVAIVVFSPGNKPYSFGHPSVDAVAAKFLDEESNPNDDSQDGSTSDDDSSTEVVVDVEERNLQLADVMAQIHKEEKKAKELDETLKQLQEGQELDDLYVEARGMVRKRLDEFEVADSMILLSQKPVEGITATKQVARKRRRKN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1773 184 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Lja5g1773 184 Coils Coil 105 132 - -
Lja5g1773 184 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lja5g1773 184 MobiDBLite consensus disorder prediction 72 94 - -
Lja5g1773 184 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Lja5g1773 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja5g1773 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja5g1773 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja5g1773 184 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 173 - -
Lja5g1773 184 PANTHER MADS BOX PROTEIN 2 173 - -
Lja5g1773 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja5g1773 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lja5g1773 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1773 Lja-Chr5 20406975 20407529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1773 1 165 Type I MADS-box Gene Family AT2G34440 40.341 2.12e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja5g1773 SRF-TF 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1773 - - gmx:100784161 186.037