Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1767 ATGGGTAGTTGCTGGTTTAATGTGTTCAAGTCAAAGGATAAAATGATGTCTTCAAAAGTCGAGGAAAATATAGGCACTGCAAAGGAAAGTTCAAAGCCTCCAACAAATGATGAAGCACCTTCAAATGTGACCAAAAAGAAGGTTGAAGCTGCAAAGCAGTACATAGAAAATCATTATAAGAAGCAGATGAAAGACCTGCAAGAGAGAAAGGAGCGACGTAATATGCTTGAAAAAAAGTTGGCTGATGCTGATGTCTCTGAGGAAGAGCAGAACAACTTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTCAGAGGCATAAGATGGGAGCTGATGATTTTGAGCCCCTGGCTATGATAGGGAAGGGTGCATTTGGAGAGGTGAGAATCTGCCGTGAGAGAGCAACAGGTCATGTATATGCTATGAAGAAACTTAAGAAATCTGAGATGCTTCGGAGAGGCCAGGTTGAACATGTAAAAGCTGAAAGAAACCTACTTGCAGAAGTTGACAGCAGTTGTATTGTAAAGCTTTATTGTTCCTTTCAAGATGAAGAGTATTTATATCTGATAATGGAGTATCTACCTGGTGGTGATATGATGACATTGCTCATGCGGAAAGATATACTGACAGAAGATGAGGCCAGGTTTTACATAGGGGAGACTGTCCTAGCTATTGAGTCGATTCATAAACATAACTATATTCACAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAACGACTTCTCTACTGGAAGCAACAGAAGTGGAGCCCTTCAGAGCAATGGTCGTCCTGTGGCTCCTAAAAGAACTCAGCAGGAACAACTGCAGCATTGGCAGAAAAATAGGCGAACACTTGCCTATTCTACGGTTGGAACACCTGACTATATTGCCCCTGAAGTTCTGCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTTTGGGAGGTATAATGTATGAAATGCTAGTAGGATATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCTAAACTATCTCCAGAGGCAAAGGATCTTATTAGCAGACTACTTTGTAATGTGCAGCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCTCATCCATGGTTCAAAGGCATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAGGAGGCGGACAACCAAACTCAACCTTCCTCAAAAGCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTTAACTTCGTCGGTTACACATACAAGAACTTTGAAATCGTGAATGATGATCAACTACATGGAATTGCTGAATTAAAGAAGAAGAGCACAAAAACTAAACGGCCATCCATCAAGACCCTGTTCGATGATGAATCGGCTACGGGTGCCAAGCAACCTCCCAAAGGAAGCTTCTTAAATCTCTTACCAACTCAACTGGAAGTTCCAGAGAATAGTGTATCACAATGA 1638 0.4072 MGSCWFNVFKSKDKMMSSKVEENIGTAKESSKPPTNDEAPSNVTKKKVEAAKQYIENHYKKQMKDLQERKERRNMLEKKLADADVSEEEQNNLLKYFEKKEREYMRLQRHKMGADDFEPLAMIGKGAFGEVRICRERATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSSCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYIGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQENDFSTGSNRSGALQSNGRPVAPKRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGGIMYEMLVGYPPFYSDEPMLTCRKIVNWRTHLKFPEEAKLSPEAKDLISRLLCNVQQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEADNQTQPSSKAGPWRKMLSSKDVNFVGYTYKNFEIVNDDQLHGIAELKKKSTKTKRPSIKTLFDDESATGAKQPPKGSFLNLLPTQLEVPENSVSQ* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1767 545 SMART serkin_6 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1767 545 Coils Coil 59 79 - -
Lja5g1767 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Lja5g1767 545 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja5g1767 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 519 - -
Lja5g1767 545 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 40 519 - -
Lja5g1767 545 Pfam Protein kinase domain 119 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1767 545 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Lja5g1767 545 CDD STKc_NDR_like 115 480 - -
Lja5g1767 545 Gene3D Transferase(Phosphotransferase) domain 1 203 433 - -
Lja5g1767 545 MobiDBLite consensus disorder prediction 499 545 - -
Lja5g1767 545 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja5g1767 545 SUPERFAMILY Protein kinase-like (PK-like) 92 466 IPR011009 -
Lja5g1767 545 ProSiteProfiles Protein kinase domain profile. 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1767 545 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lja5g1767 545 MobiDBLite consensus disorder prediction 278 297 - -
Lja5g1767 545 Gene3D Phosphorylase Kinase; domain 1 107 202 - -
Lja5g1767 545 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1767 Lja-Chr5 20034680 20041956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1767 22 539 AGC Kinase Gene Family AT4G14350 82.239 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lja5g1767 Pkinase 1.4e-64 CL0016