Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1763 ATGGGGCAAGGACAATCCAAAAGCGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACTCCGAAGGAATCAAAACCCTTCACAGAGAAGGTGCAGGCCTTGAGTGGATGGACAGAGAAGGGAAGACACCTTTGATTGTTGCTTGTATGAATCCTGAGCTTTGTAATGTTGCTAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCTTATCGTCCCGGACGTCATGCTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTAGCGAGTGGAGCCAATCCTTTGGTCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCCAGGGCTAAAGGACACAGCAATGTTGTTCGGGCAATTGAGAGCCATCTATGCTTGTTCTCCGGTTGGTTGCGGGAGTTTCATGGACCTGGGTTTCTAGAAGTTGTAGCTCCGCAGTTGGTATCAAGAAAAGTTTGGGTGGCTGTTTTACCAGTTGGCTCCCGTAATCTTACCCGACCTTACAAGTTGGAGCTTGCCGTGTATTCTTCTTTGCAGGAAGCACAACCACGGACAATTATTCCTCTGTGGAAAGCCAATTTGGAAGAACCAAAGCTTCACCAGTCTGATCCGTCGGTGACAATCGCTGATTTCACTTCAAGAAAACGCTTTAAATTTGGGCCTGCAAGTGAGAATGATAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCGCAGGCAAATCCAGCATTTTTGCTAAGTAATGTGACTACAGTTCCCCCAACAGCACCACCAGCTGCAGAAGATCCAGAGTTGGCTATGGCTATCAATGCATCCATTCAGCATGCCTTGCAAGAAAGGCCAACCGTTCCTGACGCCCATCCAAACATCGAAGCAAGCTCTTCAGTCAGTGGAGTGGATACAAGCAAGCATGGTTTTCTGGGTACACCAAATCCAGGCACAAATTTTAGTGAGTCTGTACATGAAGCTAACACAGGTGTCAGTGTTTCAGCTGGCCTTCCTAGTGGTCTGGATTTCAATCCATCGGCTCCTCCTATTAATGATGAAATTCCAGTAGATGGCCCCATTCATTATCCATCAATCGATTTAAGCCCTCTGGATATATCATCATCATCTTCAGCTGTTGAGAAGCTACCTGAAGAAGGACAAAGTGCTGGTGAAATCGGTTCAACATGCGTGATATGTTTAGATGCTCCTGCAGAAGGGGCATGCATACCTTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAAACAAAGAAATGGGGTTGCCCTGTGTGTCGAGCTAAGATAGACCAGGTCATAAAGTTATATCGTGTTTGA 1365 0.4579 MGQGQSKSELLYQQVSYGNSEGIKTLHREGAGLEWMDREGKTPLIVACMNPELCNVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLASGANPLVLNDDCQTALEVARAKGHSNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSRKVWVAVLPVGSRNLTRPYKLELAVYSSLQEAQPRTIIPLWKANLEEPKLHQSDPSVTIADFTSRKRFKFGPASENDRQQLTWFSNACKGIPQANPAFLLSNVTTVPPTAPPAAEDPELAMAINASIQHALQERPTVPDAHPNIEASSSVSGVDTSKHGFLGTPNPGTNFSESVHEANTGVSVSAGLPSGLDFNPSAPPINDEIPVDGPIHYPSIDLSPLDISSSSSAVEKLPEEGQSAGEIGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYRV* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1763 454 SUPERFAMILY RING/U-box 402 448 - -
Lja5g1763 454 Pfam Zinc finger, C3HC4 type (RING finger) 401 448 - -
Lja5g1763 454 Gene3D - 3 146 IPR036770 -
Lja5g1763 454 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lja5g1763 454 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lja5g1763 454 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Lja5g1763 454 PANTHER ROLLING PEBBLES, ISOFORM B 1 454 - -
Lja5g1763 454 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 454 - -
Lja5g1763 454 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Lja5g1763 454 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Lja5g1763 454 ProSiteProfiles Zinc finger RING-type profile. 403 442 IPR001841 -
Lja5g1763 454 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Lja5g1763 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 453 IPR013083 -
Lja5g1763 454 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Lja5g1763 454 SMART ring_2 403 441 IPR001841 -
Lja5g1763 454 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1763 Lja-Chr5 19989370 19994783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1763 373 451 C3H Transcription Factor Family AT3G06140 30.380 1.03e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1763 - - gmx:100805974 692.96