Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1759 ATGGTAAGAGCTCCTTGTTGTGAAAAAATGGGACTGAAAAAGGGTCCTTGGGCTGCTGAGGAAGATGAAATCCTCACATCATACATCCAAAAACATGGCCATGGCAACTGGCGTGCCCTTCCAAAGCAAGCAGGCTTGTTAAGGTGTGGGAAGAGCTGCAGACTGCGCTGGATTAACTATTTGAGGCCTGATATCAAGAGAGGGAATTTCACAGCCGAAGAGGAGGAATCAATCATTAAGCTGCATGAAATGCTTGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACAGACAATGAAATAAAAAATGTGTGGCACACTCATTTGAAGAAGAAGCTGCCAAAAACAGAACACCAACAACAACCAAGCTCAAAACCCAAAATTAGAGTCTCTAAATCGAAAATTAAACGCTCTGATTCCAATTCCAGCACCATAACTCAATCATCAGAACCTGTTACTCTTAGTTTCCGTGACATGGAGTCTTCATCAGCATGCACTACAACAACTTCTAGTGATTTTTCATCAGTCACTGTTGGTGATGAGAGCCAAAAAAATGCTAAAAGTGAAGAAGATACAGAGTCTATGGAGACAATGCCTGAAATTGATGAGAGTTTCTGGTCAGAAGCAGCTATGGATGATGAAATTGAAACCCCCTCATTGCCATCTTTGACAGTCTCAAATGAATTACCACTTGAAGAACCATTTAATTATGATGAAACTTTCAAGCAGAGCTATGGCTCTAATTCAAACTTTGATGATGGCATGGATTTCTGGTATGACATATTCATCAAAACTGAGGATCCAGTAGAACTGCCCGAGTTCTGA 834 0.4125 MVRAPCCEKMGLKKGPWAAEEDEILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTAEEEESIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLPKTEHQQQPSSKPKIRVSKSKIKRSDSNSSTITQSSEPVTLSFRDMESSSACTTTTSSDFSSVTVGDESQKNAKSEEDTESMETMPEIDESFWSEAAMDDEIETPSLPSLTVSNELPLEEPFNYDETFKQSYGSNSNFDDGMDFWYDIFIKTEDPVELPEF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1759 277 Gene3D - 13 66 - -
Lja5g1759 277 CDD SANT 69 112 IPR001005 -
Lja5g1759 277 CDD SANT 16 61 IPR001005 -
Lja5g1759 277 MobiDBLite consensus disorder prediction 114 201 - -
Lja5g1759 277 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja5g1759 277 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja5g1759 277 PANTHER MYB15 1 273 - -
Lja5g1759 277 SMART sant 66 114 IPR001005 -
Lja5g1759 277 SMART sant 13 63 IPR001005 -
Lja5g1759 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja5g1759 277 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Lja5g1759 277 Gene3D - 68 147 - -
Lja5g1759 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja5g1759 277 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja5g1759 277 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja5g1759 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 273 - -
Lja5g1759 277 MobiDBLite consensus disorder prediction 140 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1759 Lja-Chr5 19938427 19942649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1759 1 277 MYB Transcription Factor Family AT2G31180 47.535 5.13e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g1759 Myb_DNA-binding 4.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1759 K09422 - gmx:100807569 405.216