Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1754 ATGACATTAAGAACGAGGAGCTTCATGGTGAAGGTTCAGAGGGCGAAGCTATCGGCATGCTTCACGTGTCTTTTGTGTGATAAATTGTTCAGAAACGCCACCACAATTTCTGAATGCTTGCATACTTTTTGCAGGGAATGTATAAATAAGAAGCTAATAGATGAAAATTTACAGCACTGTCCAGTGTGCAAGGCAGACTTGGGTTGTTCTCCTTTAGATAAATTAAGGGGAGATCACAGCCTGCAATACTTGAGGGAGAAAATTTTCCCATGTGAAGGAAAAAATGCGAAGGTTCCTCAAAATGGTGCTTCAGTTAGACCGAAAAGAAAGAAGAAGAATTCTTTATCTTCATTAAAAGCCAAGGCAAGAAGAGCAAAAGCTGCTGCAAGAGAAGCTTCTACTCCACAAGAACCTGTGCTTTCTGCTTCTACTCCACAAGAACCTGTGCTTTCTGCTTCTACTCTACAAGAACCTGTGCTTTCTGCTTCTACTCCACAGGAACCAGAGCTTTCTGCTTCCATTCCACAAGAATCAGAGCTTTCTGCTTCTAAACCTGATAAAGTGGAAGATGTAAGCCAAGGTACAAAACAGTGTGGGATAAATATTTTGGATGAAGTTTCTACAATTCAATCTGCAAGAAGAGCCAAAGCTGCAGCAAGAAGAAAATTCATTCGATGTGAATTAACTCCTACTTCTCAACCCGACAAAGTAGTAACAGAAGATAAAAAGAAAGATGATGACCCTCTCCAGCTTGAAACTCCCTCAGAGACTTCAAATACCAGAGTTCAGAATTCTTCAGAACCAGATTCAAGTCAACAAATAGAGCCCAACAAGATTTCAGGGGAGAGAACAGAGTTATGGAACGAAAATGTTGATGTCCACGAGCCATTGAAATGCATAGTGGAAGCTGCAAGCAAAAAAAAGTCTCGTATCAAGTCCACCATGCAAGAAAATGGTGTCATTCCACTGCTTGTTGACTCTAGTGACAATGACTCCCAGGTTTCTGAGGTCGAAGTTAAGACACATTGTCACCAAATAAACAATTCTGGTGATCAAAATGAGTTTCCTCCTCCAAAGTTGAATACCTTCGATCTTAACCAGCTTCACATCACCGAAGAAAGAACAGCCAAAATCTCTGAGGACTTGAATGTTCCAGCACAACCTGAGATTGATTTGAACAGTGAAAGCAGCAAAGCATTTGGTCCAATCTGGTTCTCTTTGGTTGCTTCTCAAGAGAAGGAAGTAGGTGCACGATTGCCACAAATAACTTCCTGCTACATAAGGGTCAGGGATGGTAGTTTACCGGTCTCGTTTATCAAAAAGTATCTCGTAAAGAAGCTTTATCTTGCTAGTGAAACCGAGGTGGAGATCTCACTACAAGGACAGCCAGTTTTATCTTCATGGCAACTGCAAAACTTAGTGGATTTTTGGTTACAAACAGTGCCAGCCAATGAGAGGATCCAGACATCAATTGGAAGCTCAGCTAAGGATTTTGTCATGGTCCTTAAGTACAGTCGAAAGACTTGA 1527 0.4126 MTLRTRSFMVKVQRAKLSACFTCLLCDKLFRNATTISECLHTFCRECINKKLIDENLQHCPVCKADLGCSPLDKLRGDHSLQYLREKIFPCEGKNAKVPQNGASVRPKRKKKNSLSSLKAKARRAKAAAREASTPQEPVLSASTPQEPVLSASTLQEPVLSASTPQEPELSASIPQESELSASKPDKVEDVSQGTKQCGINILDEVSTIQSARRAKAAARRKFIRCELTPTSQPDKVVTEDKKKDDDPLQLETPSETSNTRVQNSSEPDSSQQIEPNKISGERTELWNENVDVHEPLKCIVEAASKKKSRIKSTMQENGVIPLLVDSSDNDSQVSEVEVKTHCHQINNSGDQNEFPPPKLNTFDLNQLHITEERTAKISEDLNVPAQPEIDLNSESSKAFGPIWFSLVASQEKEVGARLPQITSCYIRVRDGSLPVSFIKKYLVKKLYLASETEVEISLQGQPVLSSWQLQNLVDFWLQTVPANERIQTSIGSSAKDFVMVLKYSRKT* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1754 508 Pfam Zinc finger, C3HC4 type (RING finger) 23 63 - -
Lja5g1754 508 MobiDBLite consensus disorder prediction 252 277 - -
Lja5g1754 508 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 206 507 - -
Lja5g1754 508 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 9 181 - -
Lja5g1754 508 ProSiteProfiles Zinc finger RING-type profile. 23 64 IPR001841 -
Lja5g1754 508 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Lja5g1754 508 MobiDBLite consensus disorder prediction 236 251 - -
Lja5g1754 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 131 IPR013083 -
Lja5g1754 508 MobiDBLite consensus disorder prediction 234 277 - -
Lja5g1754 508 MobiDBLite consensus disorder prediction 136 180 - -
Lja5g1754 508 MobiDBLite consensus disorder prediction 104 119 - -
Lja5g1754 508 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 206 507 IPR044807 GO:0004842
Lja5g1754 508 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 9 181 IPR044807 GO:0004842
Lja5g1754 508 Coils Coil 108 128 - -
Lja5g1754 508 SMART ring_2 23 63 IPR001841 -
Lja5g1754 508 SUPERFAMILY RING/U-box 18 72 - -
Lja5g1754 508 MobiDBLite consensus disorder prediction 99 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1754 Lja-Chr5 19849966 19855207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1754 211 430 C3H Transcription Factor Family AT2G30580 28.384 4.77e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1754 K16277 - lja:Lj5g3v1204350.1 386.726