Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1751 ATGGCTACTTTGTTGGGAAAGGTGCAGAATGATTTGAACTTGAAGGAGACTGAACTATGCCTGGGTTTGCCCGGTGGTGGTGGTGGCGGCGGTGGCTCTGATCAGGTGGAAACTCCAAGGTCCAATGGGAAGAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTTAACCTTCAATCCAAGGAAGATCTGAATGATGATGTGAAGAATGTTTCAAAGGAGAAGACCCTCCTTAAGGACCCTGCCAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATGGTACAGAAGGTGAACAATGAGGATCAAGGCACTGAGAAGACAACAAGCAGCACTGCTGGTGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACTTGACAATGTACAAAAGCTACAAAGAGCTGTCTGATGCTTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGACCTTCTTAACAGTTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAACGCCTGCGAATAATGAAAGGATCAGAAGCAATTGGTCTTGCACCAAGAGCCATGGAGAAATGCAAAAACAGAAGCTGA 729 0.4719 MATLLGKVQNDLNLKETELCLGLPGGGGGGGGSDQVETPRSNGKRGFSETVDLKLNLQSKEDLNDDVKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMVQKVNNEDQGTEKTTSSTAGGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1751 242 Gene3D - 119 236 - -
Lja5g1751 242 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 235 IPR003311 GO:0005634|GO:0006355
Lja5g1751 242 MobiDBLite consensus disorder prediction 24 48 - -
Lja5g1751 242 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 9 235 - -
Lja5g1751 242 Pfam AUX/IAA family 40 233 IPR033389 -
Lja5g1751 242 ProSiteProfiles PB1 domain profile. 124 224 IPR000270 GO:0005515
Lja5g1751 242 SUPERFAMILY CAD & PB1 domains 120 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1751 Lja-Chr5 19807412 19810078 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1751 116 232 B3 DNA Binding Superfamily AT4G23980 30.769 8.32e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja5g1751 AUX_IAA 3.7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1751 K14484 - gmx:100810762 395.971