Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1750 ATGGAAGGCAAAGTGGCATATGAGAATGATCTCAACAACCTCAAGGCTACAGAGCTTAGGTTGGGGCTTCCTGGAACAGAAGAAAGTGAGAAGAAAACCAACAAAAGGCCATTGAATGAAACTTCTGAGGGTTCTAATGCTCAACAAGTTGAAAGTGGTTCAGCCCCTCCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAAGGAGGTAGAAGCTGCTGGGGTCTATGTCAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATAGACTTGAGGATCTATGGAGGCTACTCAGAACTCCTCAAAGCTGTAGAAAACATGTTCAAGTTGACTATAGGTGAGTACTCTGAAAAAGAGGGTTACAAGGGATCTGAGTTTGCCCCTACTTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGAGATGTTTGTGACATCTTGCAAAAGGCTGAGAATCATGAAAGGATCTGAAGCAAGAGGTTTGGGTTGTGGTGTATGA 534 0.4513 MEGKVAYENDLNNLKATELRLGLPGTEESEKKTNKRPLNETSEGSNAQQVESGSAPPSKAKIVGWPPIRSYRKKEVEAAGVYVKVSMDGAPYLRKIDLRIYGGYSELLKAVENMFKLTIGEYSEKEGYKGSEFAPTYEDKDGDWMLVGDVPWEMFVTSCKRLRIMKGSEARGLGCGV* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1750 177 SUPERFAMILY CAD & PB1 domains 74 166 - -
Lja5g1750 177 Gene3D - 74 177 - -
Lja5g1750 177 ProSiteProfiles PB1 domain profile. 80 167 IPR000270 GO:0005515
Lja5g1750 177 PANTHER AUXIN-INDUCED PROTEIN 13 174 - -
Lja5g1750 177 Pfam AUX/IAA family 78 174 IPR033389 -
Lja5g1750 177 Pfam AUX/IAA family 42 76 IPR033389 -
Lja5g1750 177 MobiDBLite consensus disorder prediction 17 59 - -
Lja5g1750 177 MobiDBLite consensus disorder prediction 39 55 - -
Lja5g1750 177 MobiDBLite consensus disorder prediction 24 38 - -
Lja5g1750 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 174 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1750 Lja-Chr5 19741449 19743017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1750 83 173 B3 DNA Binding Superfamily AT2G46530 37.363 2.80e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lja5g1750 AUX_IAA 7.2e-49 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1750 K14484 - jre:108989460 275.789