Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1745 ATGGTAGGATTGGAACTCATACCCATAGGCACAATTTTGACAGTGGTAACTAACCAGGTCTTGAGAACAGCTCATGCAGCAGCTGATGTTCTTGTCAGTAAAGAATGTTTCAAGACCCTTTCAAAACATCTATTTGACATTGAGCCAGTGCTAAGGGAGTTACAGCTTCAGGAACTGAATGATTCTCAAGCTGCAAGGGTTGCTCTAGAGTCTCTTGAAGCAGATGTAAAAAGGGCTAGTAATTTGGTGGACAAGTATCGGAACCGCGGGCGATTCTACTTGCTGGTTAAGTGCCGAACCATAGTCGAAGAAGTTGAAAAAGTCACAAGGGATATTGGAAAGTCTCTGAATGTTCTTTCTATTGCAAATACTCAAGTTCTATCAAGAATTTCAGATCAGGTTGATAGGCTGCAGAGTGAGATGCAAAGTGTGGAGTTTGAGGCTTCGCAACCTCAGCTCCAGATTGTTGACAAGTTGAATCAGGGAATTAGAGAACAGAAACTGGATCAGGCTTTTGCGAATTACATGCTTGAGGAGATAGCAAAGGAAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGATAGCCAGCATTAGGAGAGAAAAAGAAGAAGCTGCCAATAGGAAAGAAAAGCTTGAATTTTATTTTTTGGAGCAGATCATTCAGTTGCTCTCTCGAGCTGACGCGGCGAGGGATTATGAAGAGGTTAAGAATCAGTACTTTGAAAGGGTTAAGGTGATACAGAGATATGATTCAAGGAAAAAATATATCCACCCTCTTAACTCTTTCTGTTGTTGTATAACTGGAGCTGTTATGGTTGATCCTGTGAGCCTTTGCACAGGTACTACCTGTGAGAGATCTGCCATTGAAGATTGGTTTTACAATGGAAACATGACAGATCCGGAAACGAAAGAGGTTCTTGAAGACACTACCTTGAGGTCTAATATTCCTCTTAGACAATCCATTGAAGAGTGGAGAGAACTCAATTACTGTCTTGTAATAAGTTCTATCAGGGAAAAGTTATTATCAAGCTCTGACATGCAAGAATCCCTGAGTGAAATTCAAGCTCTAGTAAGGGAGAATTCTATTAACAAAGATTGGATTTCTATTGGAGAGCTTACTGATATTGTGATCTCTATCCTGGGGAACTCTGATGACAGAGAAGTGAAGATGAAGATTTTGATTACTTTGAAGGATGTTGTAGAGGGGCATGCAAGAAACAAGGAGAAAGTGGCTGCATCTGTAGGATGGGATCATATAATTTCATGCTTAGGGGGTGACTTGGGGATTTCAAAGGAAGCAATTCATTTGCTACAAGAGTTGCTTCTAGACCGATCTGGTTGGAATCAATGCTTTTGTAAAAAACTTTCTCAGAATCGCTATGCAGTTAGTTTCCTTGTCACCCTTCTAAAGGATCCTGTCAACGATTCAGCTGAGGTCGCGGAGAAGATTTTGAAGGAACTTTTTGAAATAAATGAGGACAGCATTGTCACTGCTGCTACTTGTGGCTGGTATAAACCACTTGTTGATCGCATGGTTCGCGGACCAGATTCGAGAATATCAATGGCAAAAGCCATAGTTAATTTGCAGTTGAGTGATTTAAACTTGAAACTCCTTGGCGAGGAAGGAGCTATACCGCCTTTGCTAGAAATGCTATCTGGTAGTATTGACTCAAAAGACACATCATTATCAGCACTGGTTAAACTAGCAGGTTCTCATGCCAACAAGGGAATCATTGCTGCATCAGGAGGTGTTCCTCTTATTCTAGATTTAATGTTACTTCCTCGGACAAAGACATTCATTACCATTAAGTGCTCCGAAATACTTGAGAAACTTTCGTCTTCTGAAGATGGAATTGAATTTTTTGTTGATGGAGAAGGGAAACAGCTTGAGTTAGATTCCATCATCACCAATTTGCTATCCCTGCAGCAGAGTTCTAGCTCAGGTCACAGCTTGCGTAAGCCTACACTACGCGCTCTCCTTGGCATTTGCAAGTTTGAGACTAGTTTGGTGAAAAAAGCAATTCTTGCAGCCAATGGTGTATCTCAAATTCTCCCACTTCTTGATGACTCTGACTCAGAAATCAGAGAAACCGCCATAAACTTGCTCTTTCTTTTCTCCCAGCATGAGCCTGAAGGAGTAGTTGAATATCTCTTCAAGCCTAGAAGGCTGGAAGCTCTGATTGGACTTCTTGAGAATGAAGACAATGACAATGTACAGATGGCTGCAGCAGGATTACTAGCAAACCTGCCGAAATCGGAACGAGAACTCACCATGAAGCTGATTAAAATGGGAGGACTTGATGCAATCATAAGCATTTTGAAAACTGGCAAAATGGAAGCCAAAGAGAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACTGATATCGAGTCACAGCGTGACCTGGTGAAACGCGGAATCTACCCTTTGCTTGTGGATTTTCTCAATACCGGTTCTGTCACTGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCCATGAGTACTCCAAATCTCACCGTCGTTTCCAAATCACCCGGTTGCTGGTTTTTAAGATCGTCGCGAGTTCCTCTATGTTCAGCACATGATAGCTTATGCAGTGTGATCACCACATTTTGTCTATTGGAAGCAGATGCTTTGCCTGGTTTGATAAAGCTGTTACATGGGGAAGTTCATGCAACTGCTTATGAGGCCATTCAGACACTTTCCACATTGGTTTTGGAAGAGTGTCCTCAAAGGGGGGCTCATGTGTTGCATGAGGCAAATGCAATGAGACCCTTGTTGGACATTTTAAATTGGGGAAGTGATTCTCTCAAGGCAGAAGCTCTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAAGAAATGGTAGAATACTATGGAACAACTGCTAGATCACGTTTAGTTGGTTTGACTGGCATGAATATATATGGGGATGGACACCTTAGGAGAAAGGCTGCTAAGGTGCTATCATTGCTTGAACGATATTCAAGGACATCATCATCTGCAGTCTCTGGAGTTATGGAATGA 3042 0.4211 MVGLELIPIGTILTVVTNQVLRTAHAAADVLVSKECFKTLSKHLFDIEPVLRELQLQELNDSQAARVALESLEADVKRASNLVDKYRNRGRFYLLVKCRTIVEEVEKVTRDIGKSLNVLSIANTQVLSRISDQVDRLQSEMQSVEFEASQPQLQIVDKLNQGIREQKLDQAFANYMLEEIAKEVGVPVEPSEISKEIASIRREKEEAANRKEKLEFYFLEQIIQLLSRADAARDYEEVKNQYFERVKVIQRYDSRKKYIHPLNSFCCCITGAVMVDPVSLCTGTTCERSAIEDWFYNGNMTDPETKEVLEDTTLRSNIPLRQSIEEWRELNYCLVISSIREKLLSSSDMQESLSEIQALVRENSINKDWISIGELTDIVISILGNSDDREVKMKILITLKDVVEGHARNKEKVAASVGWDHIISCLGGDLGISKEAIHLLQELLLDRSGWNQCFCKKLSQNRYAVSFLVTLLKDPVNDSAEVAEKILKELFEINEDSIVTAATCGWYKPLVDRMVRGPDSRISMAKAIVNLQLSDLNLKLLGEEGAIPPLLEMLSGSIDSKDTSLSALVKLAGSHANKGIIAASGGVPLILDLMLLPRTKTFITIKCSEILEKLSSSEDGIEFFVDGEGKQLELDSIITNLLSLQQSSSSGHSLRKPTLRALLGICKFETSLVKKAILAANGVSQILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGLLENEDNDNVQMAAAGLLANLPKSERELTMKLIKMGGLDAIISILKTGKMEAKENALSALFRFTDPTDIESQRDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPNLTVVSKSPGCWFLRSSRVPLCSAHDSLCSVITTFCLLEADALPGLIKLLHGEVHATAYEAIQTLSTLVLEECPQRGAHVLHEANAMRPLLDILNWGSDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLVGLTGMNIYGDGHLRRKAAKVLSLLERYSRTSSSAVSGVME* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1745 1013 SUPERFAMILY ARM repeat 378 717 IPR016024 -
Lja5g1745 1013 SUPERFAMILY RING/U-box 250 330 - -
Lja5g1745 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lja5g1745 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 334 IPR013083 -
Lja5g1745 1013 Gene3D - 560 758 IPR011989 -
Lja5g1745 1013 Gene3D - 759 1011 IPR011989 -
Lja5g1745 1013 SUPERFAMILY ARM repeat 634 1000 IPR016024 -
Lja5g1745 1013 Gene3D - 8 123 IPR036537 GO:0007166
Lja5g1745 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Lja5g1745 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Lja5g1745 1013 Coils Coil 127 147 - -
Lja5g1745 1013 Pfam MCAfunc domain 25 154 IPR045766 -
Lja5g1745 1013 Coils Coil 62 89 - -
Lja5g1745 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Lja5g1745 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Lja5g1745 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Lja5g1745 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Lja5g1745 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Lja5g1745 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Lja5g1745 1013 SMART arm_5 915 956 IPR000225 GO:0005515
Lja5g1745 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Lja5g1745 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Lja5g1745 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lja5g1745 1013 Gene3D - 335 559 IPR011989 -
Lja5g1745 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1745 Lja-Chr5 19577417 19583414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1745 264 968 U-box Gene Family AT1G76390 26.781 2.82e-38 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1745 - - gmx:100783638 1607.81