Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1730 ATGGAGGAAAGAGAAAATTTTGGTGGTGGTGGTCATGGAGTGGTGCGTGATGAGGCTCCAGGGAGCTTCCACGTGGCTCCGAGGATTGAGAACAACTTGGATTTTTCCCGGGCTATGGTGCCGGCGGCGACGCCGGCGGTGACGGAGAAGAAGAAGAGGGGGAGGCCAAGGAAGTATGGACCTGATGGCAGGGCAATACCAGGTGCAGCAGCTGCAGCTGCAGCAACGCCTCTTTCTCCGATGCCGATTTCGTCTTCGATTCCGTTGACCGGAGATTTCTCTGCCTGGAAGAGGGGTAGAGGGAGACCTGTTGAATCTATTAAGAAGTCATTCAAGTTGGATTTTGAAAGTCCAGGTCCTCCAGCTGCACCAGGACCAGGTGAGGGAATCGCATACTCTATTGGAGGCAATTTCACAGCACATGTGCTTACAGTTAATTCTGGCGAGGATATTACTATGAAGATTATGTCCTTCTCTCAACAAGGAGCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAACCAAGTTCTTCTGGGGGTACTTTAACATATGAGGGAAGATTTGAGATTCTTTCCTTGTCTGGCTCCTTTATGCCAACCGATAATGGAATTACAAAAAGTAGATCTGGTGGGATGAGCGTCTCTTTGGCGGGGCCAGATGGTCGAGTAATGGGTGGTGGGCTAGCTGGTCTGCTGATAGCAGCTGGTCCTGTGCAGGTTGTTGTGGGGAGTTTTCTTCCTGGCCACCATCTGGAGCATAAAGCCAAGAAGCACAGGGTGGAGCATGTATCAACTATTCCCACCACTACACATGCTCCTCATATGTCTAATGAGGAAATAAAAGTAAGTTTTGGTGGATTTAAGCCTATCATGACACCTGCTGCATTTCAAGAAGAGAACAATGCTTCTTTTAACAACAATGCTCAACACTCTAGGAACTCATCTGCTGATGATAAAGATGATCCTTTACCTGAAAAGGAGTCTAAGATAAACCAATCAAATGCTTAG 1032 0.4758 MEERENFGGGGHGVVRDEAPGSFHVAPRIENNLDFSRAMVPAATPAVTEKKKRGRPRKYGPDGRAIPGAAAAAAATPLSPMPISSSIPLTGDFSAWKRGRGRPVESIKKSFKLDFESPGPPAAPGPGEGIAYSIGGNFTAHVLTVNSGEDITMKIMSFSQQGARAICILSATGTISNVTLRQPSSSGGTLTYEGRFEILSLSGSFMPTDNGITKSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHHLEHKAKKHRVEHVSTIPTTTHAPHMSNEEIKVSFGGFKPIMTPAAFQEENNASFNNNAQHSRNSSADDKDDPLPEKESKINQSNA* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1730 343 MobiDBLite consensus disorder prediction 305 343 - -
Lja5g1730 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 332 IPR039605 GO:0003680
Lja5g1730 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 256 - -
Lja5g1730 343 Gene3D - 139 273 - -
Lja5g1730 343 MobiDBLite consensus disorder prediction 305 320 - -
Lja5g1730 343 ProSiteProfiles PPC domain profile profile. 135 278 IPR005175 -
Lja5g1730 343 MobiDBLite consensus disorder prediction 321 335 - -
Lja5g1730 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 253 IPR005175 -
Lja5g1730 343 MobiDBLite consensus disorder prediction 44 64 - -
Lja5g1730 343 CDD DUF296 141 253 IPR005175 -
Lja5g1730 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 11 332 - -
Lja5g1730 343 SMART AT_hook_2 50 62 IPR017956 GO:0003677
Lja5g1730 343 SMART AT_hook_2 97 109 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1730 Lja-Chr5 19338776 19345145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1730 42 314 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 51.155 1.24e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1730 - - gmx:100789179 463.381