Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1727 ATGGGGTTTTCAGCATCACTTCTTCTCTTCCCTCTCCTGTTTTTCCTCTTAAATCCAACATGGGTACATGGGAATGCAGAGCTAAGAGCACTCATAGACATGAAAGCTAGTTTGGATCCAGAAGGCCATCATCTACGCTCCTGGACTATCAATAGTAACCCATGTGGTGGATCTTTTGAAGGAGTGGCATGCAATGAGAAGGGTCAGGTTGCAAATATTTCTTTGCAGGGAAAAGGGCTTCCAGGGAAGCTTTCACCAGCCATTGCTGAGCTCAAGCACTTGACAGGACTCTACTTGCATTATAACTCTTTGAATGGAGAGATACCAAGAGAAGTTGCAAACTTGACTAAGCTTAGTGATTTGTATTTGAATGTGAATCATCTTTCTGGGGAAATCCCTCCTGAGATTGGCAGAATGGAGAGCTTGCAAGTTTTGCAGCTTTGTTACAATCAGTTAACAGGAAGCATACCTACACAGCTTGGTGCTTTGGAAAAGCTTAGTGTTGTTGCTTTGCAGTCAAACCAGTTAACTGGTGCTATCCCTGCTAGTCTGGGTGATTTGGGTATGCTGGTGAGGGTAGATTTGAGCTCTAATAATCTTTTTGGTTCCATTCCCACTAGCCTAGCTGATGCTCCTTCACTGAAAGTTCTGGATGTTCACAACAATACACTTTCTGGGAATGTACCTTCTGCTCTTGAGAGACTAGATGCTGGATTTTTGTATGAAGACAATCTGGGATTATGTGGAGTTGGGTTTCCATCCTTGAAAACTTGCAATGGTTCAGAACATGTCAATGCAAGAAGACCTGAACCTTATGGAGCATCAACAAGAGATATCCCAGAAACTGCAAATGTGGAGTTACCTTGCAATGGAACTCAGTGCCTTAATTCATCAAAATCCAAAAAAGCCACATCAGTTGCTATTGGCGTACTTGTGGTAATAATTGCAATGTCTGCAATTGGTGGTTTAACCTTCATGCTATATCGCCGGCGAAAACAAAAGCTTGGAAGTTCTTTTCATGGCTCTGATAGCCATCCAAGTATTGATGAAGCCAAGGGAATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAGTACTCTTCTGGATGGGACCCTTTGGCTGATTATAGGAGTTTGAGTTTCAATGGGGGTAGCAAAGATATGTTCCAGAGTTCCAGGTTCCACTTGGAAGAAGTGGAGTCAGCTACTCAATATTTCTCAGAGTTGAATTTGCTGGGCAAGAGTAACTTCAGTGCAACATACAAAGGGGTTTTAAGAGATGGATCTGTGGTTGCTGTGAAGAGCATTAGTAAAACTAGTTGCAAGTCTGATGAGGCTGAGTTTTTAAAGGGATTGAACATTTTGACCTCACTGAGGAATGATAATTTGGTGAGGTTGAGAGGTTTTTGCTGTTCAAGGGGAAGAGGTGAATGCTTTCTGATTTATGATTTTGTTTCTAATGGAAACCTGTCAAGCTTTCTAGATATTGAGGAAGGTGATGGAGAAGTCCTTGAATGGTCCACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTATGGCATATTTACATGCATACAAAGTAAACAAACCAGTTATTGTGCACCAAAACATCTCAGCTGACAAGGTTCTCATTGATCAACGTAACAATCCATTGCTGGCAGATTCTGGTCTCTACAAGCTTCTCACTAATGACATTGTCTTCTCTGCACTTAAGGCTAGTGCAGCAAAAGGTTACCTTGCTCCTGAATACACAAACACTGGCCGATTTACCGAGACAAGTGATGTTTATGCCTTTGGGGTGCTGGTTTTCCAGATTCTTTCAGGGAAGCAGAAGATAACTAGCTCAATAAGGCTTGCTGCAGAATCCTTCAGGTTCAACGAATTTATTGACCCGAATCTCCATGGCAGATTCTTTGAATATGAGGCAGCTAAACTAGTAAAAATAGCTTTGCTTTGCTCCCATGACTCTCCTTTTGAGAGGCCATCCATGGAAGCCATTGTTCAAGAACTAGGCAACTGTAGTAGCTGTCTCTGA 2040 0.4206 MGFSASLLLFPLLFFLLNPTWVHGNAELRALIDMKASLDPEGHHLRSWTINSNPCGGSFEGVACNEKGQVANISLQGKGLPGKLSPAIAELKHLTGLYLHYNSLNGEIPREVANLTKLSDLYLNVNHLSGEIPPEIGRMESLQVLQLCYNQLTGSIPTQLGALEKLSVVALQSNQLTGAIPASLGDLGMLVRVDLSSNNLFGSIPTSLADAPSLKVLDVHNNTLSGNVPSALERLDAGFLYEDNLGLCGVGFPSLKTCNGSEHVNARRPEPYGASTRDIPETANVELPCNGTQCLNSSKSKKATSVAIGVLVVIIAMSAIGGLTFMLYRRRKQKLGSSFHGSDSHPSIDEAKGIYRKNGSPLVSLEYSSGWDPLADYRSLSFNGGSKDMFQSSRFHLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNILTSLRNDNLVRLRGFCCSRGRGECFLIYDFVSNGNLSSFLDIEEGDGEVLEWSTRVSIVKGIAKGMAYLHAYKVNKPVIVHQNISADKVLIDQRNNPLLADSGLYKLLTNDIVFSALKASAAKGYLAPEYTNTGRFTETSDVYAFGVLVFQILSGKQKITSSIRLAAESFRFNEFIDPNLHGRFFEYEAAKLVKIALLCSHDSPFERPSMEAIVQELGNCSSCL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1727 679 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Lja5g1727 679 ProSiteProfiles Protein kinase domain profile. 407 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1727 679 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 677 - -
Lja5g1727 679 CDD TM_EGFR-like 302 334 - -
Lja5g1727 679 Pfam Protein tyrosine and serine/threonine kinase 411 672 IPR001245 GO:0004672|GO:0006468
Lja5g1727 679 Gene3D Phosphorylase Kinase; domain 1 380 485 - -
Lja5g1727 679 Gene3D Ribonuclease Inhibitor 140 252 IPR032675 -
Lja5g1727 679 SUPERFAMILY L domain-like 28 234 - -
Lja5g1727 679 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 677 - -
Lja5g1727 679 SUPERFAMILY Protein kinase-like (PK-like) 389 672 IPR011009 -
Lja5g1727 679 Gene3D Ribonuclease Inhibitor 26 139 IPR032675 -
Lja5g1727 679 Gene3D Transferase(Phosphotransferase) domain 1 486 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1727 Lja-Chr5 19319827 19322995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1727 8 520 Miscellaneous Gene Families AT4G22730 54.095 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Lja5g1727 PK_Tyr_Ser-Thr 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1727 - - gmx:100775422 1115.52