Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1718 ATGGGGCATACTGATAAAGAACAAGAAAAGGCTACTACACAAATGGAGTTCAATAAGGATAAGGCCATCAGAGCTAAAGAAGTTGCTGAGAGCAGGTTCAAAGCAAGGGACATTATAGGTGCAAGAGCATTTGCTATGAGGGCCCAAAATATGTTTCCTGATCTTGAAGGTATTCCTCAAATGTTAACAACACTTAATGTGCACAATGCTGGACTATTCAGGAGAAATGGGGAAAAAGATTGGTATCGTATACTTGGCGTCGTTCGTCTGGCTGATGATGACACTGTGAGGGAACAATATAGAAAGCTAGCTCTCGGGCTTCACCCTGAAAACAACAAGTCCATTGGTGCTGATGAGGCCTTTAAACTAATCTCAGAGGCATGGAGTGTACTATCAGATAAGGCCAAAAGGGTAGCATATAATGAGAAGATAAATGCAAAAGTTAAATCAAAGACATTTTGGACAGTTTGCAATCGATGCCGAATGCGGTATGAGTACCTCATAGTTTATCTCAATCGAAAATTACTGTGCAGATTCTGCAAGGGGATATTTTTGGCTGTAGAAATAGCTCCACCTGAAGGGGAAGCTCAATCTGTAACTGATAATAGTCTTGCAGCTGCAATCCAAAGCAGACTTATGGAGAAAATTTTCTATGTACTTGGTGATAGAAAACTACTTGTAAAAAGTATCACTGCAACCTCAATTGATCATGCATATGAGAAAGCGAAGCGAGAACGTGAGGAAGTACAAGCAGCTATGGAAATGGAAGGGGACTTATGCAGGAAGCTGCAGGATCTTGGTCAGGACTTTTTATCTGATCCTGCTAAGAGAAGAAGGGGCATGGAGGATTCAAGCTTGAGCAGCCATGGTGAACATCAGAATCTTCTTATGGAGATAAATGATATTAGCAAGAAACTCAGTGAAATGGAGACTAACCCTACTGATGAAACAGCAGTGAAAGAGAGTGGAAATGACTACCAGAAAGCAAATGGGAAAGTGGAAGTCATGGTTAAGGTGAACAATGAGGATACCATTATTAAAGAAACAAAAGATGATAACATGACAGAAGATAATGGTCAGTGA 1083 0.4054 MGHTDKEQEKATTQMEFNKDKAIRAKEVAESRFKARDIIGARAFAMRAQNMFPDLEGIPQMLTTLNVHNAGLFRRNGEKDWYRILGVVRLADDDTVREQYRKLALGLHPENNKSIGADEAFKLISEAWSVLSDKAKRVAYNEKINAKVKSKTFWTVCNRCRMRYEYLIVYLNRKLLCRFCKGIFLAVEIAPPEGEAQSVTDNSLAAAIQSRLMEKIFYVLGDRKLLVKSITATSIDHAYEKAKREREEVQAAMEMEGDLCRKLQDLGQDFLSDPAKRRRGMEDSSLSSHGEHQNLLMEINDISKKLSEMETNPTDETAVKESGNDYQKANGKVEVMVKVNNEDTIIKETKDDNMTEDNGQ* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1718 360 PRINTS DnaJ domain signature 100 115 IPR001623 -
Lja5g1718 360 PRINTS DnaJ domain signature 116 136 IPR001623 -
Lja5g1718 360 PRINTS DnaJ domain signature 82 100 IPR001623 -
Lja5g1718 360 ProSiteProfiles dnaJ domain profile. 80 144 IPR001623 -
Lja5g1718 360 PANTHER HEAT SHOCK PROTEIN-LIKE 15 323 - -
Lja5g1718 360 MobiDBLite consensus disorder prediction 272 295 - -
Lja5g1718 360 CDD DnaJ 80 133 IPR001623 -
Lja5g1718 360 SMART dnaj_3 79 136 IPR001623 -
Lja5g1718 360 Coils Coil 235 255 - -
Lja5g1718 360 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Lja5g1718 360 Gene3D DnaJ domain 72 159 IPR036869 -
Lja5g1718 360 MobiDBLite consensus disorder prediction 272 286 - -
Lja5g1718 360 Pfam DnaJ domain 80 141 IPR001623 -
Lja5g1718 360 PANTHER BNAC03G44070D PROTEIN 15 323 - -
Lja5g1718 360 SUPERFAMILY Chaperone J-domain 73 143 IPR036869 -
Lja5g1718 360 Coils Coil 292 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1718 Lja-Chr5 19172090 19173172 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1718 18 192 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.328 6.50e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1718 - - lja:Lj5g3v1211590.1 686.411