Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1716 ATGGAGTCCAATAAGGATGAGGCCACCAGAGCTAAAGAAATTGCTGAGAGCAAGTTCATTGCAAGGGACAATTTGGATGCAAGGGAGGTTACTTTGGAGGCCCTAAATTTGTATACTAAAGGTAATCCTCACATATATACAGCAATTGATGTGACTTTTGCTGCCTTAACCAAGCGAAAGGGGGAAACATATTGGTATGGTGTACTTGGTGTGGATCCTCTGGCTGATGATGACACTGTGAGGGAAAGATATAGAAAGCTAGCTCGCATGCTTCACCCTGATAACAACACGTCCTTTAATACAGATGTGGCCTATAAACTGATCTTAGAGGCATGGAGTGTACTATCAGATAAGACTAAAAGGGCAGCATATGATGAGAAGATAAATGTAAAAGAATTAACACAACATGCAAGGACTCAAGAGGGAACTGCTAAAGAACATGTTTCAAACCCTTTCTGTGAGTCCATGACATTTTTGAAAACTTGTCATCGATGCAGAATATGGTATGAGTACAGCATAGTTTATCTCAACCGTAAACTCAAGTGCAAAACCTGCAAAGCGATATTGTCCGCTGTAGAAATAGCTCCACCTGATGTGACTGATATTAGACCAGCTCCACCTGTAACTGATATTAGAGTTGCAGCCCAAAAGACACTTATAAAGCAGCAGCTACTTCTGTATTACCATAGAAAATTTATTTTAAAAAGGATGATTCCAACCCCAATTGGTCCGATCTCAAGAACTTCTGGTGTTTCCTCTTTGTCTCAAGCTAAAATTGTGGTTAGGCTTCATGAGAAAGTGAAGCGACAACGTGAGGAAGAAGAAGCAGCTATGAAAATGGAGGTGGAGGGGGACTTGTGCAATAAGCTGAATGATCTTGGTAAAGACTTTTTCTCTGGTCCTGCTAAGAGAAGAAGGGGCACGGAGGATTCAAGCTTGAGCAGCCATGATGTGGTTGGAGCATCTAACTCATGCAAATCTAGCCAGGGAAATTTTGAATCTAGTTGCATATATAAGACCATTAACAGTGCAGAAGTTGTCTCCCACAATGAACATCAGAATCTTCTTATGGAGAAAGCTATAAATGATATTAGCAAGAAACTAAGTGAAATGGAGACAAATCCTACTGATGAAACAGCAGTGAAAGAGAGTGGAAATGACTATCAGAAAGCAAATGGGAAAGAGGATGCCATGGTTAAGGTGAACAATGAGGATGCCATTGCTAAAGCAACAGCAGATAATAGCATGGCAGAAGATAATGGGGAGGAATTGATCAGTGATATGAGAAAACTTGGGGAAGATAAGGAGGGAAATAACAAAGATATCCAGAAATGA 1335 0.4052 MESNKDEATRAKEIAESKFIARDNLDAREVTLEALNLYTKGNPHIYTAIDVTFAALTKRKGETYWYGVLGVDPLADDDTVRERYRKLARMLHPDNNTSFNTDVAYKLILEAWSVLSDKTKRAAYDEKINVKELTQHARTQEGTAKEHVSNPFCESMTFLKTCHRCRIWYEYSIVYLNRKLKCKTCKAILSAVEIAPPDVTDIRPAPPVTDIRVAAQKTLIKQQLLLYYHRKFILKRMIPTPIGPISRTSGVSSLSQAKIVVRLHEKVKRQREEEEAAMKMEVEGDLCNKLNDLGKDFFSGPAKRRRGTEDSSLSSHDVVGASNSCKSSQGNFESSCIYKTINSAEVVSHNEHQNLLMEKAINDISKKLSEMETNPTDETAVKESGNDYQKANGKEDAMVKVNNEDAIAKATADNSMAEDNGEELISDMRKLGEDKEGNNKDIQK* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1716 444 Pfam DnaJ domain 65 125 IPR001623 -
Lja5g1716 444 ProSiteProfiles dnaJ domain profile. 64 128 IPR001623 -
Lja5g1716 444 MobiDBLite consensus disorder prediction 410 444 - -
Lja5g1716 444 SMART dnaj_3 63 120 IPR001623 -
Lja5g1716 444 PRINTS DnaJ domain signature 100 120 IPR001623 -
Lja5g1716 444 PRINTS DnaJ domain signature 84 99 IPR001623 -
Lja5g1716 444 PRINTS DnaJ domain signature 66 84 IPR001623 -
Lja5g1716 444 MobiDBLite consensus disorder prediction 372 397 - -
Lja5g1716 444 Gene3D DnaJ domain 62 163 IPR036869 -
Lja5g1716 444 SUPERFAMILY Chaperone J-domain 57 127 IPR036869 -
Lja5g1716 444 MobiDBLite consensus disorder prediction 313 330 - -
Lja5g1716 444 MobiDBLite consensus disorder prediction 299 330 - -
Lja5g1716 444 CDD DnaJ 65 117 IPR001623 -
Lja5g1716 444 MobiDBLite consensus disorder prediction 422 444 - -
Lja5g1716 444 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Lja5g1716 444 PANTHER BNAC03G44070D PROTEIN 1 415 - -
Lja5g1716 444 PANTHER HEAT SHOCK PROTEIN-LIKE 1 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1716 Lja-Chr5 19155256 19156590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1716 4 205 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.505 1.57e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1716 - - lja:Lj5g3v1211590.1 350.903