Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1712 ATGGGTTCAGCCAATGGCCTAGACGCATCTGAACTCTTTGAAGGCCAAGCTCTGTTATACATGAACATGTTTGGCTTCCTACAAACCATGTCTCTCAAATGGGCTATGCAACAAGGCATAGCAGACATCATATACAACCATGGCAAACCCATCACTTTCACTGAGCTGGTCACAACCCTGCAAATTCCACCAGCCAAAACCAGTTTGGTGAAGCGACTGATGCGATTTCTGGGACACAATGGAATCTTCGCGATCGCCGGCGAAGAAGAAGAAGATCATGAAGCATATGATCTCACCCCTGCATCAAAGCTTCTTATATCAAAGGCGGCTCACGCCGGCCGGTCCGACCCCTGTTTGGCTCCGATCATTCGGATGTCGGCCGATCCACTTCTGATCAACAAGTTCCATCAGCTGGGGGAGTTTCTTTCCGGCGATGTTGAAACTTTGTATGAGGTCGCCTATGGGAAACCTGTGTGGGGATTTCTTAAGGACAACCCTGAATATCAGAGTATTTTCAATGAGGCCATGGCAAGTGATTCTCAATTGGTTCACTTGGCGTTGAAAAACTGCAGTTCTGTGTTTGAGGGGCTGGATACCCTTGTGGATGTTGGTGGTGGGACAGGAACTACGGCCAGGAGTATTTGTGAGGCGTTTCCTAAGTTGAAGATTGTTGTTTATGATCTTCCACAGGTTGTGGGGAACTTGTCAGGAAGCAACAATTTGAGCTTTGTTGGTGGGGACATGTTCAAATCTATCCCTGAAGCTGATGCAGTTCTGCTTAAGTGGGTTTTACATGATTGGTCAGATGAAGTTTGCATACAAATTCTGAAAAACTGTAAGGACTCTGTTTCAAGGAATGGGAATAGAGGAAAAGTGATTATCATGGATATAATAATAAATGAAAAGGAAGATACCCAAGTTATGACTCAAACAAAGCTTTGTATGGATTTAATCATGATGGGGATTAATGGAAAAGAGAGAACTGGGAAAGAGTGGAAGCATCTCATCAAGGAAGCAGGGTTCAAAGACTACAAAATATTTCCCTTCTTTGGTTTTAGGTCTCTTATTGAAGTCTATCCTTAG 1083 0.4414 MGSANGLDASELFEGQALLYMNMFGFLQTMSLKWAMQQGIADIIYNHGKPITFTELVTTLQIPPAKTSLVKRLMRFLGHNGIFAIAGEEEEDHEAYDLTPASKLLISKAAHAGRSDPCLAPIIRMSADPLLINKFHQLGEFLSGDVETLYEVAYGKPVWGFLKDNPEYQSIFNEAMASDSQLVHLALKNCSSVFEGLDTLVDVGGGTGTTARSICEAFPKLKIVVYDLPQVVGNLSGSNNLSFVGGDMFKSIPEADAVLLKWVLHDWSDEVCIQILKNCKDSVSRNGNRGKVIIMDIIINEKEDTQVMTQTKLCMDLIMMGINGKERTGKEWKHLIKEAGFKDYKIFPFFGFRSLIEVYP* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1712 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 359 IPR029063 -
Lja5g1712 360 SUPERFAMILY "Winged helix" DNA-binding domain 10 107 IPR036390 -
Lja5g1712 360 CDD AdoMet_MTases 199 299 - -
Lja5g1712 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 360 IPR016461 GO:0008168
Lja5g1712 360 Gene3D - 2 105 IPR036388 -
Lja5g1712 360 PIRSF O-mtase 2 360 IPR016461 GO:0008168
Lja5g1712 360 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Lja5g1712 360 Gene3D Vaccinia Virus protein VP39 114 360 IPR029063 -
Lja5g1712 360 Pfam O-methyltransferase domain 140 342 IPR001077 GO:0008171
Lja5g1712 360 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 3 359 - -
Lja5g1712 360 PANTHER O-METHYLTRANSFERASE 3 359 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1712 Lja-Chr5 19092411 19094563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1712 30 346 Monolignol Biosynthesis Gene Families AT5G54160 32.407 1.03e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1712 K22588 - lja:Lj5g3v1212600.1 471.47