Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1711 ATGGTCGTAAGCGGTGGGAAGCCTCTGAAGCGGATGAAGAGGAGAGTCACAGCCGATTTCTACGACTTCCTCTCTTTCCCATCGCCTTCACTCGCCGCATCGGAGAATTTCTCCGGCGGACCGTTCCGATCTAATGTTCGGAGCTTCCTGACGAAGCACGCGCTGCTTCCGCCTCCTTCGGCGCTGTTTCCTCACCTGCTGACGTGGCAGATCCTCTTCCGCGTCGGCGAGCTCACAGACGGCCCCGATTCGGGTCCCGCGGTGGTTTGCCTCGACGTCGTGGAGGAGGACGTTGCCAGATCCAGATCTGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCACCCAGTATGTGGGAAGCGTTACCATTTTATAATCAAAGCAGATGGGAGCTCCATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGATATCTTGCACTTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACAACCACTGATGATGTTGAGGACTGGGTGTATCAACAGTTAGAGAGCACGAGTCATCTTTTACATGGTGTGGTCCATGCTAATGGTTATGGGCACCTTCTTCGCGTTAATGGCAGAGAAGGGGGCTCTAAATATCTTTCTGGTTGCAACATTATGGATTTCTGGGATCGCATGTGTAAGACTCTTGGAGTCAGAGAAGTTAGTGTGATGGATGTTTCGAAGAAATATGGTCTAGAATACCGCTTGCTGCATGCCATCATGAAGGGACATCCGTGGTACGGTGACTGGGGATATAAATTTGGCTCTGGTAGCTATTGTCTCACACAGGAAGCATATATGTCTGCTGTTGAAAACCTGTCCAATCTACCCTTGTCCAGCTTCCTCTCCAAGGGACCAATGCCCCATTCACGCGTGCAGGACATGATTTCATATTTCCAGTCTTTGGCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTTCGATTCATGATGCTCACAAGACTGCATCAAAGGTTGATGACAATGACATAACCTGTAAGAAGCGTCGACCAAATGCTTCTGGACTATCTGGTTCTTGGGAGAAGAGTGATGTGGCACGTGTTGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTCTCTGGATCTAATTGGGTGAGCTGGCGTGCTCTTAGAGGGGCTGTCTGCAAAGTGGCCTCTCCAGATCTGCTTGATTATTGCCTTGGACAACTTGGAGGAAAAGTGGTCTTTGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAATCTGCAGTTTATGAGTTCAGACTTGAGGCTGCAAATGCATCAAACTATGGAATCATAGCCGAGAGTAACTCTTCAGCCTCGAAGTATCTATCTGAAGAGAATCTCCTACAATGTTTGAGATATTTATACGAGTCTTTGCTCCATCCTCAAATGGCCCTAAACTATGTTGAAGAAGGGACTAGGATTCTTGCAATGACCTCAGCTCAGAAACTTCTGGACTGCAAGCAGTTTGTTAAAGATTATAGTCCTGAGAAGTCTCCATTGTCAGATTTGTATAAAATAGGCATCTCATGTCAGGTTGAGCTTGTGGACGAATCTGAAGACTCCGAAGCTAGAATTCCGCCAGAAATAGTCGTGCTGCCTATGGATGCTACTGTGTCTGACCTCAAGATTGAAGCAGCAAATGCTTTTCAAGATGTGTATCTTATGTTTAGAAGATTTCAAGTAGATGAGCTACTCGGCTATAGCGGTGTAGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTGGTCTGTGTTCGAGGAAGATGCATCGGGAAGAACGGGTTGGGTAAGTTCAGAATGGAGCGGGGACTCGAGAGGTGGACTGTAGAGTGCAGCTGTGGGGCTAAGGATGATGATGGCGAAAGAATGATGGCTTGTGATTTTTGTGGAGTGTGGCGGCACACAAGGTGTACTGGTATTCAAGACACTGATCCTGTTCCAATTCGTTTTGTTTGCCAGAAATGCGTAAACTCCGACTCGAAGCCTAAACCTGGTGGGCACTGTAAAGATGAGACTGTGACTAACGTTAGTGGTAGCAGTAGTTGCTTTGGAAAGGGCTTGCCAGTGCCTTCTGATCTTAGTTTTAAGGCATGGATTTAG 2157 0.4775 MVVSGGKPLKRMKRRVTADFYDFLSFPSPSLAASENFSGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRVGELTDGPDSGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYQQLESTSHLLHGVVHANGYGHLLRVNGREGGSKYLSGCNIMDFWDRMCKTLGVREVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTQEAYMSAVENLSNLPLSSFLSKGPMPHSRVQDMISYFQSLAEHELVNMRDLFCFLMGSIHDAHKTASKVDDNDITCKKRRPNASGLSGSWEKSDVARVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPDLLDYCLGQLGGKVVFGGMVVNSRCNPQSAVYEFRLEAANASNYGIIAESNSSASKYLSEENLLQCLRYLYESLLHPQMALNYVEEGTRILAMTSAQKLLDCKQFVKDYSPEKSPLSDLYKIGISCQVELVDESEDSEARIPPEIVVLPMDATVSDLKIEAANAFQDVYLMFRRFQVDELLGYSGVDDSTQVKLLLGSKDVVCVRGRCIGKNGLGKFRMERGLERWTVECSCGAKDDDGERMMACDFCGVWRHTRCTGIQDTDPVPIRFVCQKCVNSDSKPKPGGHCKDETVTNVSGSSSCFGKGLPVPSDLSFKAWI* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1711 718 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 681 - -
Lja5g1711 718 Pfam PHD-finger 630 676 IPR019787 -
Lja5g1711 718 SUPERFAMILY FYVE/PHD zinc finger 620 678 IPR011011 -
Lja5g1711 718 PANTHER OS01G0877500 PROTEIN 1 681 - -
Lja5g1711 718 SMART PHD_3 629 675 IPR001965 -
Lja5g1711 718 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Lja5g1711 718 CDD PHD_MMD1_like 629 674 - -
Lja5g1711 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 680 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1711 Lja-Chr5 19083102 19088034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1711 77 674 PHD Transcription Factor Family AT5G22260 30.000 4.90e-85 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja5g1711 PHD 7.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1711 - - gmx:100818189 1207.97