Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1708 ATGGAGTGTAGCGATTTTCATGTTGACAAGAGCCTAGAGAAAAAGATAATAATAAGTTACAAGGAATGTCTCAAGAACCATGCAGCTGCAATTGGCGGCAATGCAACTGATGGATGTTGTGAATTCATGCCTGCTGGAGATGAAGGCACCCTTGAGGCTCTCAAGTGCTCAGCTTGCAATTGTCACAGAAACTTCCACAGAAAAGAGGTAGATTCTGACTCCAATATCCCTTCTCAACATTATGTTCTTCCACTCCTTCCCATTTTGGCTCATTCATCTCTCAACAAAAGTGGGTCAATTAGTCCTTCTGATCAATCTGATGAGAAGGACTGTGACTATGGGATTAAGAGGGTGGAAAATCCAAAGGAAAATGTGAAGAAGAGGTCAAGAACCAAGTTCACGCAAGAACAAAAGGAGAAGCTGTTGGGTTTTGCAGAGAAGGCAGGGTGGAGGATACAGAAACTAGAAGAATCTGTGGTTCATAAGTTCTGTCAAGAGGTTGGAATCAAGAGAAGAGTCCTCAAAGTGTGGATGCACAATAACAAGAACACTTTTTCCAAGAGAAAACTCTCCACTACCTAG 582 0.4227 MECSDFHVDKSLEKKIIISYKECLKNHAAAIGGNATDGCCEFMPAGDEGTLEALKCSACNCHRNFHRKEVDSDSNIPSQHYVLPLLPILAHSSLNKSGSISPSDQSDEKDCDYGIKRVENPKENVKKRSRTKFTQEQKEKLLGFAEKAGWRIQKLEESVVHKFCQEVGIKRRVLKVWMHNNKNTFSKRKLSTT* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1708 193 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 70 IPR006456 -
Lja5g1708 193 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 126 183 IPR006455 -
Lja5g1708 193 Gene3D - 115 187 - -
Lja5g1708 193 SUPERFAMILY Homeodomain-like 123 187 IPR009057 -
Lja5g1708 193 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Lja5g1708 193 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 187 - -
Lja5g1708 193 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 14 187 - -
Lja5g1708 193 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1708 Lja-Chr5 19040982 19041563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1708 11 188 ZF-HD Transcription Factor Family AT1G14440 49.500 8.27e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja5g1708 ZF-HD_dimer 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1708 - - gmx:100793926 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1708 5 19040982 19041563 Lja5g1708 5 19040982 19041563 ECH