Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1707 ATGGCTACCAGGCGTTTGAGGGCATTCAAGCGATGGATGAAGTCCAATGGATTCGAGTGGAGCGACTCACTGGAGTTTGTGGACACCCCAGAAGAGGGAATAGCTGTGAGAGCTTTGAGCCAGTTGAAGGAAGGTGAGGTTGTGGCCAAGATGCCAAAGGAAGCTTGTCTCACCATCAAGACTAGTGGGGCAAGTGAGATCATTGAAGGTGCTGGTTTGGGTGGTCATTTGGGATTAGCAGTTGCCATCATGTATGAGAGAAGCTTGGGTGGGGACTCACCCTGGTATGGCTACCTTCAAGTCTTGCCTCAACAAGAGTGCTTGCCTTTGGTTTGGACCCTCAATGAAGTGAATGACCTTTTGTGTGGTACTGAGCTTCACCAGACAGTGCAAGAAGACAAAACTCTTATGTATGAGGACTGGAAAGAGAATATTCTGCCTCTGTTGGATTTAGCACCTTCAGAGCTTAACCCAGAATTCTTTAGCGTAGAACAATACTTTGCAGCCAAAAGTCTTATTACTTCGCGAGGTTTCGAGATAGATGATTACCATGGTTCTGGCATGGTCCCTTTAGCAGATCTATTCAATCATAAAACGGGTGCGGAAGATGTGCATTTTACTGCTATGCCCTCTAACTATGATGCTGACGATGATGTTGATGAGGGCATTGTTGATGAAGAGTTGGCTGAAAATTCCTCTGTAGATATGTCTGAGTTAGAGCCTGCTCAAGTAGGTAACTGCATTGGTAGTGACTCGGAGTGTTCTTCAGTTACTGAGGGTGATGCTTCAATACTAGAGATGATTATGATAAAAGATGTCAGCAGTGGAGCTGAGGTGTTTAATACTTACGGGATAATGGGTAATGCTGCTTTGCTTCACAGATATGGATTTACTGAACAAGATAATCTATTTGATATTGTGAACATTGATTTGGAGCTGGTACTTCAATGGTGTTCGTCTTTGTTCTCCGACCGCCAATGTAGAACAAGAGTCTCCCTTTGGAGAAGGTTAGGCTATTCTGCAAGTGACAGTGAAAACTCTGAATATTTTGAGATCTCATTTGATGGAGAACCACAGACTGAACTCCTCATTTTATTATACATCATGCTATTACCAGATGATGCCTACCATAAGTTAGACCTATCAGTATCAGTTGCTGGAAATTGTCATGAATCAAGTGAAACAAGTCTTTCTAATATGAGCAAGAAATCTGTGCTGACTAAAGAAGTTTGTAATGCTCTGTTGTCGCTAGCCGATATGAGGGAGAGTCTCTATGGTTCAAAATCAATGGAAGATGATATTGAGGCATTGGGAAGGTGTAGTTCAGTAAGTGAGAGAAAGCTGTATAATTCTTTGGTGCTGCGCATTAGTGAACGGAAGATCCTTCAAAAACTCAGAAGTTATGCTTCACAGTCACATAAATCTAAGATCACTAATCATAGTTCTGCAAGGAAGAAGTTGAAAAGGACAACAAAGAAAGACTGA 1485 0.4236 MATRRLRAFKRWMKSNGFEWSDSLEFVDTPEEGIAVRALSQLKEGEVVAKMPKEACLTIKTSGASEIIEGAGLGGHLGLAVAIMYERSLGGDSPWYGYLQVLPQQECLPLVWTLNEVNDLLCGTELHQTVQEDKTLMYEDWKENILPLLDLAPSELNPEFFSVEQYFAAKSLITSRGFEIDDYHGSGMVPLADLFNHKTGAEDVHFTAMPSNYDADDDVDEGIVDEELAENSSVDMSELEPAQVGNCIGSDSECSSVTEGDASILEMIMIKDVSSGAEVFNTYGIMGNAALLHRYGFTEQDNLFDIVNIDLELVLQWCSSLFSDRQCRTRVSLWRRLGYSASDSENSEYFEISFDGEPQTELLILLYIMLLPDDAYHKLDLSVSVAGNCHESSETSLSNMSKKSVLTKEVCNALLSLADMRESLYGSKSMEDDIEALGRCSSVSERKLYNSLVLRISERKILQKLRSYASQSHKSKITNHSSARKKLKRTTKKD* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1707 494 MobiDBLite consensus disorder prediction 472 494 - -
Lja5g1707 494 MobiDBLite consensus disorder prediction 478 494 - -
Lja5g1707 494 PIRSF RMS1_SET 1 473 IPR011383 GO:0016279|GO:0018026
Lja5g1707 494 Gene3D - 300 482 IPR036464 -
Lja5g1707 494 ProSiteProfiles SET domain profile. 22 284 IPR001214 GO:0005515
Lja5g1707 494 Gene3D set domain protein methyltransferase, domain 1 2 297 - -
Lja5g1707 494 Pfam SET domain 33 284 IPR001214 GO:0005515
Lja5g1707 494 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 478 - -
Lja5g1707 494 SUPERFAMILY SET domain 263 302 IPR046341 -
Lja5g1707 494 SUPERFAMILY SET domain 4 205 IPR046341 -
Lja5g1707 494 CDD SET_LSMT 23 298 - -
Lja5g1707 494 PANTHER RIBOSOMAL LYSINE N-METHYLTRANSFERASE 3 5 478 - -
Lja5g1707 494 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 323 481 IPR036464 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1707 1 493 NAC Transcription Factor Family AT3G56570 54.190 1.43e-180 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja5g1707 SET 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1707 K05302 - lja:Lj0g3v0132279.2 859.366