Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1701 ATGGCAACTATTGAGTTTCCTGCAGGTTCTTGTGAAGTTGGGGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGCTCTGAAAATTTCTATAGTACATTTGAATCTGAGTTAGCAGGTGTTATCCCTGTGGTCAAAACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGCGTTGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAAATGCAACATTTGAGAAATAGTCTACCTGATCACGTTGTTGTTCAGCGCATAGAAGAGAGACTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACGCACACTGATCTTGACAAGGGGACAGTAGCTATAGAAAGCTACACAGGTACAAAAATTCTCTCTGATGTTTTGTATGTACCTGAAATTACTAAAAACTTGCTTAGTATTGGACAGTTGCTTGAGGAAGACTTCAAAGTTTCATATACATCCACTAAGGATCTTACCCTTCTAGGAGTAGACTCTGGTGATGAATCTTGTTGTTGTGGAGGTGAAGTAGGCTCACCTGGATTTTCTACTTCTTCTTCAACTTCTTCTTGA 609 0.4154 MATIEFPAGSCEVGVFSKLTNAYCLVAIGGSENFYSTFESELAGVIPVVKTSIGGTRIVGRLCVGNKNGLLLPHTTTDQEMQHLRNSLPDHVVVQRIEERLSALGNCIACNDHVALTHTDLDKGTVAIESYTGTKILSDVLYVPEITKNLLSIGQLLEEDFKVSYTSTKDLTLLGVDSGDESCCCGGEVGSPGFSTSSSTSS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1701 202 Pfam eIF-6 family 9 127 IPR002769 GO:0042256|GO:0043022
Lja5g1701 202 Gene3D - 2 173 - -
Lja5g1701 202 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 8 127 - -
Lja5g1701 202 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 8 127 IPR002769 GO:0042256|GO:0043022
Lja5g1701 202 SMART eIF6neu2 2 201 IPR002769 GO:0042256|GO:0043022
Lja5g1701 202 SUPERFAMILY Pentein 9 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1701 Lja-Chr5 18956024 18961159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1701 1 143 Eukaryotic Initiation Factors Gene Family AT3G55620 77.622 6.82e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1701 K03264 - sly:101255078 224.557