Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1690 ATGGCAACACGAAGATACGCGTTTGGACTGTTAGATGAGGCTAACCATCCAGACTCCATTAGAGCAACCATAGCTGAATTTGTCTCCACTTGCATCTTTGTCTTTGCAGCAGAAGGCTCTGCACTTGCTCTGCGCCAGATTTACAAGGATCCAGGAGCATCAGCGGGTGAGCTAGTTGTGATTGCAGTAGCTCATGCCTTTGCACTGTTTGCTGCTGTGTCTTCCAGCATGCATGTATCAGGTGGCCATGTCAACCCTGCTGTGACCTTCGGTGCACTTCTTGGAGGCAGAATCTCAGTTGTTAGAGCCGTCTACTATTGGATTGCTCAACTTCTTGGTTCTATTGTGGCTTCCCTCTTGTTGAGGCTTGTCACCAACAACATGAGACCCCAAGGATTCAATGTGTCATACGGTGTTGGTGCGGCACACGGCCTCATATTCGAGATTGCCATGACATTTGGTCTCATGTACACTGTCTATGCTACTGCTATTGATCCCAAAAGAGGCACCATTGGCAACATTGCACCCTTGGCAATTGGGCTCGTAGTTGGGGCAAACATCCTCGTTGGTGGGCCTTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCCTTGGTGGGCTGGAGATGGCACTACCACTGGATCTTCTGGGTTGGCCCATTTCTTGGGGCTGCCCTTGCTGCACTCATATATGAATACATAATGATCCCAACTGAGCCTCCTCATGCTCATCAACCATTGGCTCCTGAAGATTACTAG 768 0.4987 MATRRYAFGLLDEANHPDSIRATIAEFVSTCIFVFAAEGSALALRQIYKDPGASAGELVVIAVAHAFALFAAVSSSMHVSGGHVNPAVTFGALLGGRISVVRAVYYWIAQLLGSIVASLLLRLVTNNMRPQGFNVSYGVGAAHGLIFEIAMTFGLMYTVYATAIDPKRGTIGNIAPLAIGLVVGANILVGGPFDGACMNPARAFGPALVGWRWHYHWIFWVGPFLGAALAALIYEYIMIPTEPPHAHQPLAPEDY* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1690 255 SUPERFAMILY Aquaporin-like 15 245 IPR023271 -
Lja5g1690 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 255 - -
Lja5g1690 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lja5g1690 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1690 255 PANTHER AQUAPORIN-8 1 255 IPR034294 -
Lja5g1690 255 Gene3D Glycerol uptake facilitator protein. 5 245 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1690 Lja-Chr5 18689270 18691169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1690 2 255 Major Intrinsic Protein MIP AT1G73190 70.833 2.45e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1690 K09873 - gmx:100814469 440.269