Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1686 ATGGCTGGGGGAGATGCAGAGAAGGGGAAAAGATTCGCCATCATTGGTGTGTCAGCCTTGTTATTGGTGGCTATGGTTGTGGCTGTCATAGCTGGCGTGAGCCATGATCATGAGTATGACAATGATATAGAAGACAACAGGAAGCACATTGCAACAACTTTAAATGCAGTGCAAACCATTTGCCATCCCACTGATTACAAGGAGGAATGTGAGGAAAGCCTGATAGCAGAGGCAGGAAACACCACTGACCCAAAAGAGCTTATTAAAATTGCATTTGACATTACAATTAAGAAGATTGGTGACAAACTTGAGGAAACAAATTTGTTACATGAGGTTGAGAATGAGCCTAGAGCCAAGATGGCACTTGACACATGCAAACAACTCATGAATCTTTCAATTGAGGAGTTAACAAGGTCATTTGATGGAATAAAAGAGTTTGATCTCATGAATTTGGAGAAAATCCTCATGAATGTTAAGGTTTGGCTTAGCAGCGCGGTCACATACCAAGATACATGCTTGGATGGGTTTGAGAACACAACTAGCAATGCTGGTATGAAGATGAGGGACCTATTAACAACAAGCATTCACATGAGTAGCAATGCCCTTGCTATTGTCTCTGACCTTGCCGATACCGTCTCGGATTTCAATGTCACAAAGTTAACCGGACGTCGCCTCCTCCATCAGGATGATTCTGAGACTCCCTCATGGGTTGATCATGACCATCGCAGACTCTTTGATTCAAAGAAAAATATATTCAAACACAAGCCTAATGTGACTGTAGCCATTGATGGAAGTGGAGATTTCAAGACCATCAATGAGTCATTGAAGAAAGTTCCTGACCATAATGAAAATCCTTTTGTGATTTACATCAAGGAGGGTGTTTACCAAGAATATCTTGAAGTTACCAAGCATATGACCCATGTCGTGTTTGTGGGTGATGGTAGCAAAAAGACACGAATTACTGGCAACAAAAACTTCATAGATGGGATTAACACCTATAGAACCGCCACTGTTGCTATTCAAGGAGATCATTTTACTGCCATCAATATTGGTTTTGAAAACTCTGCTGGACCCCAAAAGCATCAAGCAGTAGCATTGAGGGTTCAATCAGACAAGTCCTTGTTCTACAATTGTTCAATGGATGGTTATCAAGATACACTTTATGCACACACAATGCGTCAATTCTACCGTGATTGTACCATTTCAGGTACCATTGACTTTGTCTTTGGTAATGGGCTAGCTGTTTTCCAGAACTGCACTTTTGTGGTCCGAAAGCCTATGAAAAACCAGCAGTGCATTGTGACTGCACAAGGCAGGAAAGAAAGGCAACAACCAACAGGAATAATCATCCAAGGGGGTTCCATTGTGTCTGACCCTGAGTTCTACCCAGTGAGGTTCGACAACAAGGCCTACCTCGCTCGTCCATGGAAGAATTTCTCCAGAACTATTATCATGGACACCTTTATTGATGATTTGATTCAACCTGATGGTTACTTACCATGGCAAGGATTGGATGGACCTTCCGGCATGAACACCTGCTTTTATGCTGAGTACCACAACACTGGCCCTGGTTCAGACAAATCAAAACGTGTGAATTGGGCTGGGATCTGGAACCTCAATTCAGAAGCTGCACATTGGTTCTCTGCATCCAAATTCTTCCATGGAGATGACTGGATTCGGGCTACTGGGATTCCTTACTTCCATGGCATTCCCGACCATCATAGGCATAAGAAGACATTACTTAATTGGTTATAG 1755 0.4256 MAGGDAEKGKRFAIIGVSALLLVAMVVAVIAGVSHDHEYDNDIEDNRKHIATTLNAVQTICHPTDYKEECEESLIAEAGNTTDPKELIKIAFDITIKKIGDKLEETNLLHEVENEPRAKMALDTCKQLMNLSIEELTRSFDGIKEFDLMNLEKILMNVKVWLSSAVTYQDTCLDGFENTTSNAGMKMRDLLTTSIHMSSNALAIVSDLADTVSDFNVTKLTGRRLLHQDDSETPSWVDHDHRRLFDSKKNIFKHKPNVTVAIDGSGDFKTINESLKKVPDHNENPFVIYIKEGVYQEYLEVTKHMTHVVFVGDGSKKTRITGNKNFIDGINTYRTATVAIQGDHFTAINIGFENSAGPQKHQAVALRVQSDKSLFYNCSMDGYQDTLYAHTMRQFYRDCTISGTIDFVFGNGLAVFQNCTFVVRKPMKNQQCIVTAQGRKERQQPTGIIIQGGSIVSDPEFYPVRFDNKAYLARPWKNFSRTIIMDTFIDDLIQPDGYLPWQGLDGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSEAAHWFSASKFFHGDDWIRATGIPYFHGIPDHHRHKKTLLNWL* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1686 584 PANTHER PECTINESTERASE 10 571 - -
Lja5g1686 584 CDD PMEI-like_3 59 209 - -
Lja5g1686 584 SMART PMEI_2 52 204 IPR006501 GO:0004857
Lja5g1686 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 207 IPR006501 GO:0004857
Lja5g1686 584 SUPERFAMILY Pectin lyase-like 255 569 IPR011050 -
Lja5g1686 584 Gene3D - 251 570 IPR012334 -
Lja5g1686 584 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Lja5g1686 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Lja5g1686 584 Pfam Pectinesterase 257 556 IPR000070 GO:0030599|GO:0042545
Lja5g1686 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Lja5g1686 584 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Lja5g1686 584 PANTHER PECTINESTERASE 10 571 - -
Lja5g1686 584 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1686 Lja-Chr5 18657155 18659105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1686 5 570 Carbohydrate Esterase AT3G05610 48.587 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1686 K01051 - gmx:100815272 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1686 5 18657155 18659105 Lja5g1686 5 18657155 18659105 ECH