Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1683 ATGACAATGGAAGTGTCTCATAGTACTCTAAGGAATAAGCTAAAGACTCTTTGTTCTTATGAACATGGCTGGTCTTATGCAGTTTTCTGGCGTTTTCATCCGCGGAATTCTTTGATGCTGATCATGGAAGAAGCATACTATGAAGAGGAATTGGGAGAAGATATTGCACACGTGCTTCCACAAATGCATTTGCTGGGTGAAGGAATTGTTGGTGAAGCAGCTTTTAGTGGCAAGCACAGTTGGGTGCACTCAGATAGTCAAACCCAAGAATGGAATTTTACTGGGCAGAATACTACTGAGGATGATTCTGGATTGCATCAACAATTCTCCAATGGGATAAAGACAATTGTGGTCATACCTGTAAAAGCATGTGGGGTGGTACAGTTTGGATCCAAAAAGAAGATTTTTGAGACAGTGGATTTTTTGGAGCAAACACAAAGCCTGCTAATGGAGATAGATGATAAGGATGTGCCTGATGATATGTTAGGAAATGAAGTTTTATCACTGGAATTTGAAAATTTTGATCTACATGGTTTGCTTGATTCCATTTCAACTGAAAATTCACATGATTGGAATCTCCAATATCCTCATGATGAACACTTCAATGAATTGAGCAAAGTTTATTCTTCTGCAAGTTCCAATGACCCTTTCACTTCCCAATTGAAGATTGGGGAAGAAGGGATGATGACTTCATGGCAAGGAGATTCTTCTTATCTTAGTGACCTATTGAATGATCCCATTGAAGAGATTAATGATGTGCTTTTGAACAGCTTAATTGACAAAAACCCTTGTTTTGATTCATGGAGTGGTGAAATATCCTCTTTTGATTTGTTGGAGCAACAATTGGCACCTGAAATAGGACCACAAGAAGTTATAGATGTGTGTTTTGCAGAAGAAAATGCATTTTCTAGTATCCAACTTCCAGTTCAAGATTCAGCATTGACCTCACTGAATAACCAACATTCTTCTAAATCTATTGTTGTGGCTGATGTTAATTTCCCATTGAGTTCTGATACCTTACATGAATTCTCTGAGAATTTAGAGCCAGTTGATATGTCAGAAGAGTTTTTGAAGTTCAGTTCCATGGATGATCTTTTCCAGTGGTTTGCTCCTTCTGCAACCCTTTCTGAATCAATAGAATTTAACCCGTCTTCTTCTATGGTTGGAAGTAGTTCAAGTGATATTCCAGTGGCATGCCTAACTGGGAATAATTCCTTCGCCTCTACAATCAACTCGATCGGGAAAGAAACATCTGCGGTTACACATAGTTCTGAAAATAACCTCTTGGATAACATGGAACTTGATTTGAGCTTTGATCAAGCTGATCAATGGTGGGGAAATATAATAACACCAATGGTCAATGCTGCTCCTGATTCTAGCTTTTCTCAATGCCTATCAGAAATGAACATAGGTACAATGAGTAGCAACGGGAAGAGATTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGAGGGGTGAATCAAGTTCCAATCCTTATAACAGTTCAGATTTTGGGTATGGATTATCATCCAATAAGAGGCAGTTAGTAGAACTTTCAGCAATGAATAGAAATCCAATGAGTTTTGCAAATCTTGCTGGGAATGAGGTTAGAGCAAACTTGATGCAGCCAGTTTCTGACTTGGAAAATTCAAGCAGCAGTCTTTTAGGCAAGAAAGATACATTCCTAAAATCACAAGTAGGCATGTTGAGTGATGATAGGCATAGCATTCATATTGGGAAAGATGTTCCTGTCTCCCTCCAAAAGCCGAAGGAACACACGAAGCCCACTAGGAGAGGGGCTAGGCCAAAGGAGAGTACTCGGCCACGACCAAAAGATCGCCAGCAGATCCAAGACTGTATCAAAGAGCTGAGAGGAATCATCCCCAGTGGTGGAAAGTGCAGCATTGATTCGTTGCTAGACCGCACCATTAGATACATGGTTTTCTTAAGAAGTGTCATCAATTATGCAGACAAGCTACAAGAACCCCATGAGCCAAAGCTCATTAACCAGGAAAATGAAGAGGTTCCAAATGATAGTGGTGTTACATGTGTATTTGAAGTGGCAAATCAAACTATGGTGTGCCCAATCATAGTTGAGGACATGAGCCAACCTGGGCATATGCTTATAGAGATGCTTTGTGAGGAGCAGGGTTTCTTCCTTGAGATTGTTGACATAATTAAGGGATTTGGGCTCAATATCTTGAAGGGAAAGATGGAATTGAAGAAGAACAAACAATGGTCACGCTTTATTGTCGAGGCAAACAGTCATAATGTGTCAAGGATAGATGTATTTTGGTCCCTTCTCCATCTTCTACAGCAAACAAACAGCTCTGGTGTTGATTCTGCTAATCAGCATAGTAATGTTATTGGTACAATCTTTTCTTAA 2385 0.3962 MTMEVSHSTLRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMEEAYYEEELGEDIAHVLPQMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKACGVVQFGSKKKIFETVDFLEQTQSLLMEIDDKDVPDDMLGNEVLSLEFENFDLHGLLDSISTENSHDWNLQYPHDEHFNELSKVYSSASSNDPFTSQLKIGEEGMMTSWQGDSSYLSDLLNDPIEEINDVLLNSLIDKNPCFDSWSGEISSFDLLEQQLAPEIGPQEVIDVCFAEENAFSSIQLPVQDSALTSLNNQHSSKSIVVADVNFPLSSDTLHEFSENLEPVDMSEEFLKFSSMDDLFQWFAPSATLSESIEFNPSSSMVGSSSSDIPVACLTGNNSFASTINSIGKETSAVTHSSENNLLDNMELDLSFDQADQWWGNIITPMVNAAPDSSFSQCLSEMNIGTMSSNGKRLFSELGIEELLRGESSSNPYNSSDFGYGLSSNKRQLVELSAMNRNPMSFANLAGNEVRANLMQPVSDLENSSSSLLGKKDTFLKSQVGMLSDDRHSIHIGKDVPVSLQKPKEHTKPTRRGARPKESTRPRPKDRQQIQDCIKELRGIIPSGGKCSIDSLLDRTIRYMVFLRSVINYADKLQEPHEPKLINQENEEVPNDSGVTCVFEVANQTMVCPIIVEDMSQPGHMLIEMLCEEQGFFLEIVDIIKGFGLNILKGKMELKKNKQWSRFIVEANSHNVSRIDVFWSLLHLLQQTNSSGVDSANQHSNVIGTIFS* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1683 794 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 8 791 - -
Lja5g1683 794 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 613 656 IPR036638 GO:0046983
Lja5g1683 794 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 59 148 IPR025610 -
Lja5g1683 794 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 8 791 IPR043561 GO:0003700|GO:0006355
Lja5g1683 794 MobiDBLite consensus disorder prediction 579 615 - -
Lja5g1683 794 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 600 649 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1683 Lja-Chr5 18604826 18609083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1683 591 781 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 49.223 1.39e-53 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1683 - - lja:Lj5g3v1237810.1 1275.38