Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1669 ATGAATGATTCTTCAGGAGATAATTGGCTTAATCCGTTTGATGACGAGCTTTATATCATCGATGAGGATGATAGTCTAAATTCTAGCCCTGCCAACGGTTTGAAGCAGGGTGTGAATGAAGGGGATAATGATGGGGAAAATTTTGTGGATGTCGATGAGATGTTTGAAACTGGAAATGACAGTCAAAAAAACTCTGATGTAGAAGTTAAAGTCATGAAAAGGATTACTGAATTGTCTGCAGACGACATTAGAGGGATGGATTTCTCTTCTGAGGAGGAAGCATGTGAATTCTATTCTAAATATGCTCGTATCCGTGGATTCTCTCCAAGAAAAGATGATGTATACAAGGATGATGATGGCAAGATTATCTCACGACAGGTGGTGTGCAATAGGGCTGGACAAAGGCATCAGAAGCATATGCATAATAGTGGCAGAAGAAAACAACCTAAGCCTATTACTAGAGTGGGTTGCCTTGCTATAATTCGATTTCGTTGTTTTTCTAGCAGTAAAAGGTGGAAAGTGGTTTTTTTTTGCGATGAACACAATCACCCATTAACACCATATAAGCATGTTCATTTGATTCCAAAATTCCGGCAATTGAGTGAAGGGGACAAAGCTCAAGCAGAAGCATGCGAAAAGGATGATGATTTTTCAAGTGTAATGGAAGACATTTATAAGCTGTTGAGGGATGTTCAGAAGAGTCGCAAACCGGGTTGTACAACAAAGAGTGCAGCCTTTAATGTGGGTGATCCAACTGTTGTACAGGGTAGAGGTGCCCCCAAGAAGACCAGAACTGTCACCAAGAGAAGGCATTGCTCAAATTGCAGGGGTATTGGACACACGATTCGTACGTGCCCGGTTTTGCTTTATCCTGATCAAGTCAATAACAGTGAAACAGGTGAATCTGCAAGTGAAGGAATTGAGGACAGCACAGACGACGAGACAAACGTTGGCAGCGTAGATCGGCAAAATAATGGGGCTTCGGTGGCAAGTAAACTTAAATCGCAGCAACGGAAGCAGGGAAATGACTCCTCATCCACCCAAGTATCTGTAGATGAAATGCTTGTCATTCATCTTAAATTTTCTTGCATTGTGCTCAAGTTTTCTTTTTAG 1113 0.4151 MNDSSGDNWLNPFDDELYIIDEDDSLNSSPANGLKQGVNEGDNDGENFVDVDEMFETGNDSQKNSDVEVKVMKRITELSADDIRGMDFSSEEEACEFYSKYARIRGFSPRKDDVYKDDDGKIISRQVVCNRAGQRHQKHMHNSGRRKQPKPITRVGCLAIIRFRCFSSSKRWKVVFFCDEHNHPLTPYKHVHLIPKFRQLSEGDKAQAEACEKDDDFSSVMEDIYKLLRDVQKSRKPGCTTKSAAFNVGDPTVVQGRGAPKKTRTVTKRRHCSNCRGIGHTIRTCPVLLYPDQVNNSETGESASEGIEDSTDDETNVGSVDRQNNGASVASKLKSQQRKQGNDSSSTQVSVDEMLVIHLKFSCIVLKFSF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1669 370 MobiDBLite consensus disorder prediction 296 348 - -
Lja5g1669 370 MobiDBLite consensus disorder prediction 317 348 - -
Lja5g1669 370 MobiDBLite consensus disorder prediction 24 43 - -
Lja5g1669 370 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 24 202 - -
Lja5g1669 370 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
Lja5g1669 370 Pfam FAR1 DNA-binding domain 96 186 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1669 Lja-Chr5 18254007 18257446 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja5g1669 FAR1 1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1669 - - adu:107459133 136.346