Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1664 ATGAGGTTAAAGTTAATGATGGGGACTGAGCTTATGAGAATAAGTGTAAAAGATGATAATGATGACTATCCATCAGTCCCACCAGGTTTTGAATCATATACATCTTTCTCACTGAAGAGAGTAGAAGGCAATGAGAAACAAGATGATAAGAATATGACCAGTTGTTCAGCCTCTACAAGTGCTTCTGAACCTCAGTCAACTCAGGTGGAAAATGATGGTCAAGTTGGTGGTACTAAAAAGATTTCCAGATCCCTTCGACGAAGACCTTGGATTAACCATGGACATTATGAGAACAATTCAGAGGAAGACTCTGATTGTGAGCGGCTTGATCAAAGTTTATCCTCAAGACCTTGTCTTCCTAAGGGAGTTATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCGGATGGCGACCAGAAGATCCTCATAGGCCAAATCTCGATGATGCTCCTGTTTTCTATCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAAAGCTGAACCTTATGGAATTTGTCGCATTGTTCCCCCGTCGTCTTGGAGACCCCCTTGTCCTCTCAAGGAACAAAGCATATGGGAGGGCTCTAAATTCGCTACCCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGGGTCGGGTAGAAAAATGCCAAAGATTCAAAGTAATATGAAACGGAAAAGAAGAAGATGCACAAGAATGGGAGTGGATAATGGCACTAAAACAGGACCTAATGAGGTATTTTGTGAAGCTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACGCTGGAAACATTTCAGAGATATGCAGATGATTTCAAGATCAAATACTTCAGAAATGAAAATCTATCTCAGTTGGGTGCTAATACTACAATTTTAAATGGTAACTCGGAGCCGTCTGTCGAGAACATTGAGGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTACGGAGCTGATCTGGAAACTGGGGTTTTTGGCAGTGGTTTTCCTAGCAAGTCTACTTACGTTGGTTCTGCTTCACATGAACAGTACATAACATCTGGCTGGAATTTAAATAACTTTGCAAGGCTACCTGGATCTCTTCTCTCTTATGAAACCAGTGATATATCTGGTGTTCTGGTGCCATGGTTGTATATAGGAATGTGTTTTTCCTCTTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATGTGGTATGGCGTCCCTGGAAAAGATGCTTGCAAACTGGAAGAGGCCATGAGAAAGCATTTACCAGAACTTTTTGAAAGCCAACCTGATTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATTCTTAAGTCTAAAGGAGTACCAGTTTATAGATGTGTTCAAAACCCTGGGGAATTTGTTCTGACATTTCCGCGAGCCTACCACTCTGGGTTCAATTGCGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCAGTTGACTGGCTACCCCATGGGCATATTGCTATAGATCTGTATCGGGAGCAAGGGCGTAAGACTTCTATATCCCATGATAAGCTGTTGCTTGGGGCTTCTAGGGATGCAGTACAAGCCCAATGGGAGCTCAATTTGCTGAAGAAAAACACTTCGTGTAATCTACAATGGAAAGGTTTTTGTGGAAAGGATGGCCTGCTGGCAAAAGCACTCAAGACACGTGTTGGGGTGGAAAAAGTAAAAAGGGAATTTCTCTGCGGTTCTTCGCGAGCATTAAAAATGGAGAGTAGTTTTGATGCTATAAGTGAAAGGGAATGCAGCATTTGCTTTTTTGATTTACACCTATCTGCAGCTGGTTGTCGCTGTTCCCCTGATAGATATGCTTGCTTGGATCATGCAAAGCATTTATGTTCTTGCTCTTTGGATTCTAAATTTTTCCTCTTCCGCTATGATATTAGTGAGCTAAATATTCTTGTTGAAGCATTGGAAGGAAAGTTAAGTGCAGTGTACAGATGGGCAAAATTAGATCTTGGGCTGGCACTAACTTCTTATGTCTCAGCAGACAAGGAAACAATACTTAAGGAATGGAGATTTCATTCATCCAACTCATCTTCCAGGGCCAGTGCGAATAAAGAGGTGACTTTGGATCCATCAAAGAAATTTACTAAAGATTCTCAATTGATAATTGTTCCAATAAAGGATAAAGCAAATTCAGCAAATAGCAAGGATCGGAGCTATCTTCAACAAAGGAAACCAGTAGTACTTGCCTTGTCTCCTTATAGTCACATGAAAGAAAAGTTAACTTTCAATAGCTCAAAACCTGCATGTGAGATGGATAATAGTGAGATCTGTGTTAATAAAGGAGAGTCTGTGAGTTGCGGATCCAATCCAACTACTGTTTGTGAATTGTCTCAAGAGGATTCATCATATGCTTTATCTCTGTCTCAAGCTCAACATGGAGGTGAGAAAAGTTCACTTTACAAACGTAACAGTATTATACTTAGTGATGACAAAGATGTTGAAATGAAGATGCTGGATTCAGATAGAAGGAAGGAACTTCCTCATATGCTTGCAGGTTCTAGAAATAAAGCCAGTCCATGTAACAATGAAGATACAAACTTGACCCTCGCAGTGACAGATGTAGTCAGGAGTGAAAAGGACACTATTACATTGCCCTGTGAAGATATGAGTTCAGGTTCAACTCAGCTTTTGCATGTGAAACAAGAATCTCTTGAACGGAGAGAAGGGCCAGGTCCAGCTTCTACGCCAGTAGATCTTTCTTTTCATATAGGCCTTACTAGTGCAGAATCAGTTAGAAATATTCCAGCTTCTTCAACAGCAGGGGGTAGCAATCATTGTTTGGAAAGTTTGGATATTTGTCCTAACAGACAACATTCTGGCACTGCCAAGGTGAAGAATGAGGATAATGAAGAAAAGTTTGGAGGATGTGCCACTTCTAATGTAGCAGATAATGCAAGAGCTGTTAATGAAAATGTCTCTTGCAGTGTAAACAACCACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTACGGCGTATCAACTGCAATGTCGAACCTTTGGAGTTTGGAGTTGTGCTTTCTGGAAAGTCTTGGTGCAGCAGTAAGGCTATATTTCCAAAAGGGTTTAGAAGCCGTGTTAGATACATAAATATCGTAGATCCATCGAGTATGTGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTTGGAAAGTTGTCCAAATGAGGTCTTCTTTCATGTATCAGCTATAAGATGCTGGGAACTGGTAAGAGACAGAGTGAATCAAGAGATCACAAAGCAACATAAACTTGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCAGGCAGCCTTGATGGTTTTGCGATGTTTGGCTTTTCTTCACCAGCAATAGTTCAGGCTATTGAGGCACTGGATCAAAGTCGAGTTTGTAACGAATATTGGGATTCCCGGCCCTACTCCCGGCCTCAAGGGCAGATTTCACAAGCTTGCCAAACCAATTCAAATGGTGGAAATGACCAAGGGCTTCACGCGCCCGTTGAAGCTGCTGCAGTGCTAAGGAGCCTGTTTAAAAAGGCCAATGCAGAAGAATTGAATTCTTTGTACAGCATTCTTACTGACAATAAGCTAGCCGCTGACCGGACCCTAATTGCACAACTTCTCAATGAAGAGATTCACAAATCCCGACAGCCCTAG 3774 0.4171 MRLKLMMGTELMRISVKDDNDDYPSVPPGFESYTSFSLKRVEGNEKQDDKNMTSCSASTSASEPQSTQVENDGQVGGTKKISRSLRRRPWINHGHYENNSEEDSDCERLDQSLSSRPCLPKGVIRGCPDCSNCQKVVAGWRPEDPHRPNLDDAPVFYPTEEEFQDTLKYISSIRSKAEPYGICRIVPPSSWRPPCPLKEQSIWEGSKFATRVQRIDKLQNRGSGRKMPKIQSNMKRKRRRCTRMGVDNGTKTGPNEVFCEAERFGFEPGPEFTLETFQRYADDFKIKYFRNENLSQLGANTTILNGNSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPSKSTYVGSASHEQYITSGWNLNNFARLPGSLLSYETSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFESQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIDLYREQGRKTSISHDKLLLGASRDAVQAQWELNLLKKNTSCNLQWKGFCGKDGLLAKALKTRVGVEKVKREFLCGSSRALKMESSFDAISERECSICFFDLHLSAAGCRCSPDRYACLDHAKHLCSCSLDSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALTSYVSADKETILKEWRFHSSNSSSRASANKEVTLDPSKKFTKDSQLIIVPIKDKANSANSKDRSYLQQRKPVVLALSPYSHMKEKLTFNSSKPACEMDNSEICVNKGESVSCGSNPTTVCELSQEDSSYALSLSQAQHGGEKSSLYKRNSIILSDDKDVEMKMLDSDRRKELPHMLAGSRNKASPCNNEDTNLTLAVTDVVRSEKDTITLPCEDMSSGSTQLLHVKQESLERREGPGPASTPVDLSFHIGLTSAESVRNIPASSTAGGSNHCLESLDICPNRQHSGTAKVKNEDNEEKFGGCATSNVADNARAVNENVSCSVNNHRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSKAIFPKGFRSRVRYINIVDPSSMCYYISEILDAGRGWPLFMVSLESCPNEVFFHVSAIRCWELVRDRVNQEITKQHKLGRKGLPPLQPPGSLDGFAMFGFSSPAIVQAIEALDQSRVCNEYWDSRPYSRPQGQISQACQTNSNGGNDQGLHAPVEAAAVLRSLFKKANAEELNSLYSILTDNKLAADRTLIAQLLNEEIHKSRQP* 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1664 1257 Pfam JmjC domain, hydroxylase 394 510 IPR003347 -
Lja5g1664 1257 SMART fyrc_3 1091 1185 IPR003889 GO:0005634
Lja5g1664 1257 ProSiteProfiles FYR domain FYRN motif profile. 1027 1085 IPR003888 GO:0005634
Lja5g1664 1257 SMART cupin_9 364 527 IPR003347 -
Lja5g1664 1257 Pfam C5HC2 zinc finger 617 667 IPR004198 -
Lja5g1664 1257 Gene3D Cupin 138 511 - -
Lja5g1664 1257 MobiDBLite consensus disorder prediction 40 86 - -
Lja5g1664 1257 MobiDBLite consensus disorder prediction 220 247 - -
Lja5g1664 1257 Pfam F/Y-rich N-terminus 1040 1082 IPR003888 GO:0005634
Lja5g1664 1257 ProSiteProfiles JmjC domain profile. 364 527 IPR003347 -
Lja5g1664 1257 Gene3D - 1034 1171 - -
Lja5g1664 1257 SMART JmjN_1 152 193 IPR003349 -
Lja5g1664 1257 Pfam F/Y rich C-terminus 1090 1173 IPR003889 GO:0005634
Lja5g1664 1257 PANTHER JUMONJI 14-RELATED 983 1254 - -
Lja5g1664 1257 PANTHER JUMONJI 14-RELATED 76 759 - -
Lja5g1664 1257 MobiDBLite consensus disorder prediction 50 78 - -
Lja5g1664 1257 ProSiteProfiles FYR domain FYRC motif profile. 1087 1177 IPR003889 GO:0005634
Lja5g1664 1257 SUPERFAMILY Clavaminate synthase-like 353 554 - -
Lja5g1664 1257 SMART fyrn_3 1041 1085 IPR003888 GO:0005634
Lja5g1664 1257 ProSiteProfiles JmjN domain profile. 153 194 IPR003349 -
Lja5g1664 1257 Pfam jmjN domain 154 187 IPR003349 -
Lja5g1664 1257 PANTHER LYSINE-SPECIFIC DEMETHYLASE 983 1254 - -
Lja5g1664 1257 PANTHER LYSINE-SPECIFIC DEMETHYLASE 76 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1664 Lja-Chr5 18130654 18138533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1664 7 1255 JUMONJI Transcription Factor Family AT1G08620 53.994 0.0 1229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja5g1664 JmjC 2.2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1664 - - gmx:100800271 2010.34