Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1660 ATGGATCTTTACTATAATGGAAACTGTTGGGGAAGTGTCCAGAAAAATGAGCCTTGGGATTTCCATACTGCTGCAATGGGGATATCCCTCCAATCTGAATCTTCAAATTTCATGTTCTCTCAACATGTCTCAAGGGTAAATTCTCAAGTTTCCAATCTTTTTCCTGGCTGGAACTCTAACTCAATCCTTGGAGATATAAGGCAATGTCAACCCCAGCTGATGCATTTACAACAAAGTTTCGAACAATTTATCCAGCCAAATGAGCTTTGTGGTAAATCTACTACTTTCCAGACTTGTTCACGCTTTCTAGATCGGAATGAAAATTGCGGGCAAATGTCAGGGAAGAAAACACTGAAGCGGCCCTGGCTAGATTCATGCTATGACTCTGGAGGCATGCTACGACCTGACAAAATACTAAAAATGATGTCTGATTTTGATGTCTCTTCCATTAATGATGCAATCTCTGATCAATGGACTCCCAAGACGTCTCAACCTTATTCTTTTGAAGAAGCACTTCCAGAATTGCAGCAACAGCGAGAAAATTCCATTTCTTCTATCTATTCTGATGTTGCAAATTGCCATGTGGAACGTTTTGCATATCCACGGCATGATTCTATGAGCATATGTGGTCAAATATTAGAGGAGTCAGACCTCAGAAGCCATGATCCAAGAGATAGCAGTAACTTAATGGAAACTGACAATAGATTGAATTCTAGTATGCATACTCTCTGGAGTGATCCTATTGCTACCGATATAGAGGACATACATGGCAAAACTGGAGTTTCGGAACAATCGGAAAATCCCAGACATGATTCTATGCCAATCAGTGAGACGGTGAACCATGTGATTGATGAAATGCTTCCGCAAACTTTCAAGAGTGATACAATTCATTATAAAGTCTTAGAAGCTGTAATGGAGGAGCCAGACCCCATTCTTGATTCTATGAGCATTGACGATACGTTTGGGAAGACTTTCAAGAGTACAACAGTTCACTCTAAAGGCTTAGAGGATGATCATATATCAGAGGACTCGGACCCCGAAAACCATGTTCCTGCCAACAGCAATAACTCGAAGGAGACTAAAGTTATTTTGAGTTCCAGTATGCGTTCCCTCAGCGATGTTTATATTGCTGCAGATGTAGAGGACTCAGATCCCGAAAACCTTGTTCCCGCAAACAGCAATAACTCGAAGGATACTGAAATTAGTTTGAGTCCCAGTATGCGTTCCCTCAGCGATGTTTATATTGCTGCAGATGTAGAGGACATAAGTGGAAGAATTGGATTCAACCTGGCTCGGATAAATGCTGAAAATAAAGTCAGTGAGGAAAAAGTTGATGAAAAGAAGGAAACCAAGTTCTCAAAAATGACAGCTAATATTGTTTCCTTAACTGATTTTTTCACAAGTAATCAAATCAGAGAACACATTAGAAGTCTGAGAAAGCAGCCTGTCCAGAGTATGCCTGCGGAAGAAGCGGGAATTGATGCTAATACATGCCAATTATGTGCAATGCAAAAGCTCTATTTTGCACCAGTGCCAATATATTGCTCATGTTGCAGTAAGCCGATCAAGCTAAACACAGACTACTACCATAAAAAAGCTGAAGAATCTGATTCACAAAATTTCTTTTGCACCGTGTGTTATAAGAAGTCTCGAGGTGAGCACATCACATACAACGCAATATCTGTTCCGAAGGAACTTCTTGATAGAAAGACAAATGATGAAGTACTTGTAGAAGGGTGGGTTGAATGTAAAAAATGCGAAAGATGGCAACATCAAATATGCGCACTCTTTAACGGAATGAGAGATCTGGTCATCTGTGCTGACTATATATGTCCTATATGCCGCTTGAAGGAAATTAACGAAGGAATTCATATATCCTCACCAAGGACAGCTATTTTCGGTGCCAAGGACTTGCCAAGAACCATGCTTGGTGACCACATAGAGAAAAGACTTTTTAAGCGTCTCATGCAAGAGAGAGTAGGCAGGGAAAAAGTCGAAGGGACTAAGAATCTTGATGAGGTTTTACCAGCAGACAGTCTTTCTGTTAAAGTAGTGTTATCTGCTGACAAACAATTGGAAGTGAAGAAGCAGTTTCTAAACATCTTTCCGGAGAAAAATTACCCTGCTGAGTTCCCTTATACATCAAAAGTTATTCTTCTGTTTCAGCAGATTGACGGAGCAGATGTTTGCCTTTTTGCAATGTATGTCCAGGAGTTTGGCTCAGAATGTGGCAATCCCAATAAGCGTTGTGTATATATTTCATATCTTGATTCTGTCAAGTATTTTAGGCCTGAAAGAGAGACTATAAGGGGAGAAGCTCTTCGCACCCTCGTTTACCATGAGATATTGATTGGATACCTTGATTTTTGCAAGAAGCGAGGTTTCACAACATGCTATATATGGGCCTGTCCTCCTACAAAGGGGGAAGATTACATACTATATTGCCATCCTGACACTCAGAAGACCCCGAAGAATGATAAACTACGGCACTGGTATCTTTCAATGCTAAGGAAGGCTGCTGAAGAAAATATTGTTCTTGGTTTAAGTAACATATATGATCATTTCTTTGTTCCTACTGGGAAATGGGACTCCAAGGTGACAGCTTCCCGTTTGCCATACTTTGATGGAGACTACTGGTCTAGTCGTGCTATGGGTCTAGCCGGCGACATTGATAAAGACAGTGGGTATGAAAAGACATTGAAGAAACTTGTGAAAAACAAAAGAGCTTTAAAGGCCTTGGGGCATGTTAACCCTTCAATAGACACTGCCAAAGACATTCTAGTGATGCAGAGGCTGGGCAAAGAAATTCTGCCATACAAGGAAGACTTCATCATAGTTCACCTTCAGCATTCATGCGTGCACTGCCAGGAAGTGATAGTTTCTGGGAAGCGGTGGTTTTGCACTGAATGCAAGAAATTTCAAGAGTGTGAAAGATGCCATACTGCTGACTCACACACTTCAACTAGTGGCGAGAAACATACACTCTGTCAGGTCCTCGTGGAAGATGTCCCTTTAGATACTAAACAGAATGATATCATCCTTGACAATCAATTATTCGAGAATAGGCATAACTTCCTGAGCTTCTGCCAGAAGAATCAGCTACAGTTTGACACCCTCCGCCGCGCGAAGCACTCCTCAATGATGATCCTCTATCACCTAAAGTATTCCTCAATATGTAGCATTTGCGGCGGTGAACGCAACGAATTCCAACATAGCTGTAGATGTGAGTGTTGTCCTGAGTTCTCTGCTTGCAAGGAGAGAGGTGCTGAATGCCATGCACAGGAGTTGAGTCAAACTCATTCAACATCACTATCTACCTCAGGGAATGAAGAGTCAAAGCTGAAATCGACATGCCATGAACAGAAGTTGAGTCAAACTCATTCAAAATCACTATCTGTGAAGAAACTGCTAGAAGTTCTGCAGCATGCATCTCAATGCAATAACTCAAACGAAACACAGCCATGCCCTTATACATACTGTCTTAAAATGAAAATTCTGTTATCTCATGCCAGAGAGTGCATTACTCGTGCTTCGGGGCGCTGTCGACCTTGTTACAAGGCATTGATGTTACTAGATGCTCACTCGAAGACATGTGAAGTCTCAGAATGTCGCATCCCATGTTGCATGAATCTGAAGAAGCGTCGAGAATCTCGGGATAGAGCTGCTGTTGTGAAAAGCAAACAGAGAACTTTCTGA 3696 0.4145 MDLYYNGNCWGSVQKNEPWDFHTAAMGISLQSESSNFMFSQHVSRVNSQVSNLFPGWNSNSILGDIRQCQPQLMHLQQSFEQFIQPNELCGKSTTFQTCSRFLDRNENCGQMSGKKTLKRPWLDSCYDSGGMLRPDKILKMMSDFDVSSINDAISDQWTPKTSQPYSFEEALPELQQQRENSISSIYSDVANCHVERFAYPRHDSMSICGQILEESDLRSHDPRDSSNLMETDNRLNSSMHTLWSDPIATDIEDIHGKTGVSEQSENPRHDSMPISETVNHVIDEMLPQTFKSDTIHYKVLEAVMEEPDPILDSMSIDDTFGKTFKSTTVHSKGLEDDHISEDSDPENHVPANSNNSKETKVILSSSMRSLSDVYIAADVEDSDPENLVPANSNNSKDTEISLSPSMRSLSDVYIAADVEDISGRIGFNLARINAENKVSEEKVDEKKETKFSKMTANIVSLTDFFTSNQIREHIRSLRKQPVQSMPAEEAGIDANTCQLCAMQKLYFAPVPIYCSCCSKPIKLNTDYYHKKAEESDSQNFFCTVCYKKSRGEHITYNAISVPKELLDRKTNDEVLVEGWVECKKCERWQHQICALFNGMRDLVICADYICPICRLKEINEGIHISSPRTAIFGAKDLPRTMLGDHIEKRLFKRLMQERVGREKVEGTKNLDEVLPADSLSVKVVLSADKQLEVKKQFLNIFPEKNYPAEFPYTSKVILLFQQIDGADVCLFAMYVQEFGSECGNPNKRCVYISYLDSVKYFRPERETIRGEALRTLVYHEILIGYLDFCKKRGFTTCYIWACPPTKGEDYILYCHPDTQKTPKNDKLRHWYLSMLRKAAEENIVLGLSNIYDHFFVPTGKWDSKVTASRLPYFDGDYWSSRAMGLAGDIDKDSGYEKTLKKLVKNKRALKALGHVNPSIDTAKDILVMQRLGKEILPYKEDFIIVHLQHSCVHCQEVIVSGKRWFCTECKKFQECERCHTADSHTSTSGEKHTLCQVLVEDVPLDTKQNDIILDNQLFENRHNFLSFCQKNQLQFDTLRRAKHSSMMILYHLKYSSICSICGGERNEFQHSCRCECCPEFSACKERGAECHAQELSQTHSTSLSTSGNEESKLKSTCHEQKLSQTHSKSLSVKKLLEVLQHASQCNNSNETQPCPYTYCLKMKILLSHARECITRASGRCRPCYKALMLLDAHSKTCEVSECRIPCCMNLKKRRESRDRAAVVKSKQRTF* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1660 1231 Pfam TAZ zinc finger 1134 1207 IPR000197 -
Lja5g1660 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 614 IPR013083 -
Lja5g1660 1231 MobiDBLite consensus disorder prediction 331 346 - -
Lja5g1660 1231 Coils Coil 430 450 - -
Lja5g1660 1231 SMART TAZ_2 1127 1209 IPR000197 -
Lja5g1660 1231 PANTHER CBP/P300-RELATED 390 1213 IPR013178 GO:0004402|GO:0006355|GO:0016573
Lja5g1660 1231 SUPERFAMILY RING/U-box 927 989 - -
Lja5g1660 1231 PANTHER HISTONE ACETYLTRANSFERASE HAC2 390 1213 - -
Lja5g1660 1231 ProSiteProfiles Zinc finger TAZ-type profile. 1126 1211 IPR000197 -
Lja5g1660 1231 SMART PHD_3 542 615 IPR001965 -
Lja5g1660 1231 MobiDBLite consensus disorder prediction 331 359 - -
Lja5g1660 1231 Gene3D - 946 995 IPR043145 -
Lja5g1660 1231 Gene3D TAZ domain 1121 1230 IPR035898 -
Lja5g1660 1231 SUPERFAMILY TAZ domain 1128 1213 IPR035898 -
Lja5g1660 1231 ProSitePatterns Zinc finger PHD-type signature. 543 614 IPR019786 -
Lja5g1660 1231 SMART KAT11_2 669 959 IPR013178 GO:0004402|GO:0006355|GO:0016573
Lja5g1660 1231 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 632 1058 IPR031162 GO:0004402
Lja5g1660 1231 Pfam Histone acetylation protein 670 880 IPR013178 GO:0004402|GO:0006355|GO:0016573
Lja5g1660 1231 ProSiteProfiles Zinc finger ZZ-type profile. 947 1003 IPR000433 GO:0008270
Lja5g1660 1231 SUPERFAMILY FYVE/PHD zinc finger 579 617 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1660 Lja-Chr5 18039956 18046433 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lja5g1660 HAT_KAT11 2.7e-29 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1660 K04498 - aprc:113866525 1105.51