Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1654 ATGGCCTCATCATCTGATCTGGTGTTTAGAGTGCGGCGGTGTGAGCCGGAGCTGATTGGTCCAGCTGAAACGACCCCTCGTGAAGTGAAACTACTTTCTGACATAGATGACCAAGATGGCTTACGGTGCCAAATTCCTGTGGTGCAGATCTATCGTTGCAATCCATCAATGGCGGGGAAGGACCCTGTTGAGGCCATTAGGAAAGCATTGGCCAAAACACTTGTGTTTTACTATCCTTTTGCAGGTAGGCTCAGAGAAGGGCCTGGTAGGAAACTCATGGTGGATTGCACTGCTGAGGGTGTTTTATTTATTGAAGCCGATGCAGATGTCACTCTTGATCAATTTGGTGATCCTCTTCAACCTCCATTCCCATGCATGGAGGAGCTCATTCAAGATGTTCCTGGTTCTGAAGGAATCCTTAACACACCCTTGTTGCTTATACAGGTAACGCGACTCAATTGCGGTGGTTTCATTTGCGCTATCCGATTAAATCACACCATGAGTGATGCGGTTGGTTTGGTCCAATTTATGAGTGCTATAGGAGAAATTGCTCGGGGAATGAGTGAACCTACAATCCTACCGGTGTGGCGTAGAGATATTCTAAGTGCAAGGGACCCACCAAAAGTGACATGCACTCATCCTGAATACGAACAAGTACATAACATCAAGGAAATTATCTCCATCCCCATAGATGACATGGTCAATCGGAATTTCTTCTTTGGTTCTACTGAGCTAGCTTCAATTCGTAGTTTTCTTCCTTCCCACCAACTTCCGTGCACAAATTTTGAAATTCTCACAGCATTTTTCTGGCGTTGTCATACAATAGCTTTGCAACCAAACAGTGATGAGGAGGTTCGCATGCTCTGCCTTGTTAATGCACGTGGCAAGCTTGACTCTCCATTACCAACTGGTTACTATGGTAATGCTTTTGCACTTTCGCCTGCAATCACCACTGCTAGGAAGCTATGTGAAAATTCATTGGGATATGCATTAGAGCTAGTGAGGAAAGCAAAAGCTAATGTCACTAAGGAGTATATGCATTCATTAGCTGATTTAATGGTCATTAAAGGACGACCACTCTTCACTTTGCAAATATCGTTTATGGTGTCAGATTTAAAGCTTGCTGGGTTCAAACGGGTTGACTTTGGGTGGGGGGAGGCTGTTTATGGAGGGGTAGCCAAGGCAGGAGTTGGGCCCATACCTACGCTAGGTTACACTCCCTTTAAAAATGCTAAAGGAGAGGAAGGTTTAATGACATCTATTTATTTACCATCTAAAGCCATGGAGAAGCTCATAAAAGAGTTGAATAATGTGCTTAAGAACCATATCCAAACTACTCAGGGTGGTCCAAACTCCGGTTTTATCGTTTCTTCATTATAG 1380 0.4413 MASSSDLVFRVRRCEPELIGPAETTPREVKLLSDIDDQDGLRCQIPVVQIYRCNPSMAGKDPVEAIRKALAKTLVFYYPFAGRLREGPGRKLMVDCTAEGVLFIEADADVTLDQFGDPLQPPFPCMEELIQDVPGSEGILNTPLLLIQVTRLNCGGFICAIRLNHTMSDAVGLVQFMSAIGEIARGMSEPTILPVWRRDILSARDPPKVTCTHPEYEQVHNIKEIISIPIDDMVNRNFFFGSTELASIRSFLPSHQLPCTNFEILTAFFWRCHTIALQPNSDEEVRMLCLVNARGKLDSPLPTGYYGNAFALSPAITTARKLCENSLGYALELVRKAKANVTKEYMHSLADLMVIKGRPLFTLQISFMVSDLKLAGFKRVDFGWGEAVYGGVAKAGVGPIPTLGYTPFKNAKGEEGLMTSIYLPSKAMEKLIKELNNVLKNHIQTTQGGPNSGFIVSSL* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1654 459 Coils Coil 425 445 - -
Lja5g1654 459 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 9 441 - -
Lja5g1654 459 Pfam Transferase family 13 434 - -
Lja5g1654 459 PANTHER ALCOHOL ACYLTRANSFERASE 9 441 - -
Lja5g1654 459 Gene3D - 224 434 IPR023213 -
Lja5g1654 459 Gene3D - 7 218 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1654 Lja-Chr5 17958510 17960382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1654 42 435 Monolignol Biosynthesis Gene Families AT5G48930 28.019 5.64e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1654 K19861 - gmx:100797017 648.662