Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1652 ATGTCTAGCGTCAGGGAGGATATTAACAAATACATCTTAATTTCAAATTCTGAGGATGAAGGTGAGAGAAGGGATTTTGACCTAAATGAAGACCCTCATGCTTCTCTGATAAATGGATTGCCTTTTAATTCTCAGGTTTCTGCTGCTGATAGAAACATTTCAATGGGTGAGGATCTAATTCAAACACCATTAGCTCCTCCTGGAGGATATGCTACAAAAGATAGTCATGAACAACACAATGATGGGAAGCAAGCTAACTTGGTAACTCATGATACTAACAAAGGCAAAATGCCAATGTATTGTTATGAGGAAGACGGTGCAAAAGTTGATGAAGGCTGGCCAATCACTGAATATATTCAGTTAGGAGGTAAACAAAACGGAAATGGATCCACTCAAGGAAGCATCTCACCTTCTGAAGTGACTGTTGCTGGTTCAGCTTTAAAATCTAATTCAAAAAGGTTGATTTTCGATTTGGATTTTGATTATTACAAAAAACGGTTTACGAGTAGGAACCGTATGCTACCAAAAGCAGTGGTCCAAGTTGAGAGTGTAGCAGACGTGCTTGATGATGGTTATCGTTGGCGTAAGTATGGACAGAAATCTATCAAAGGGAATCTAAAGCCTAGGTGCTACTATAGGTGCACAAATGTTGGGTGTCCTGTTATGAAAAAAGTTGAAAGGGATCGACACAATTTGAAATATGTGGTCACTAGTTACGAGGGCAAACATAATCATGAGGTGCCCTTGGGAAAACATGTAGATTTCTCGCTTGATGCTGATGAATTTCTCGAAGCTGGTAATTCGTTGGAGACTATTGCCATACCTAGGAATGCCAATATTCCAAGCCTTGAAGCAAATCCCAAAGACGACAATGATTTTCTGAGACTAACTTTGGGTCAAAAATTCAGTAATGATCATATGAATGTTGGGTCTTCAACCACAAGCCAAATTCCATTTATCAACTTGAAGGAGGATGGCAATGATATATGA 990 0.3909 MSSVREDINKYILISNSEDEGERRDFDLNEDPHASLINGLPFNSQVSAADRNISMGEDLIQTPLAPPGGYATKDSHEQHNDGKQANLVTHDTNKGKMPMYCYEEDGAKVDEGWPITEYIQLGGKQNGNGSTQGSISPSEVTVAGSALKSNSKRLIFDLDFDYYKKRFTSRNRMLPKAVVQVESVADVLDDGYRWRKYGQKSIKGNLKPRCYYRCTNVGCPVMKKVERDRHNLKYVVTSYEGKHNHEVPLGKHVDFSLDADEFLEAGNSLETIAIPRNANIPSLEANPKDDNDFLRLTLGQKFSNDHMNVGSSTTSQIPFINLKEDGNDI* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1652 329 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 128 319 - -
Lja5g1652 329 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 128 319 IPR044810 GO:0003700
Lja5g1652 329 Pfam WRKY DNA -binding domain 189 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1652 329 SUPERFAMILY WRKY DNA-binding domain 184 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g1652 329 MobiDBLite consensus disorder prediction 68 91 - -
Lja5g1652 329 ProSiteProfiles WRKY domain profile. 183 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1652 329 SMART WRKY_cls 188 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1652 329 Gene3D WRKY domain 174 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1652 Lja-Chr5 17911348 17915455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1652 175 258 WRKY Transcription Factor Family AT2G38470 57.143 7.25e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja5g1652 WRKY 6.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1652 K18835 - lja:Lj5g3v0550200.2 310.457