Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1651 ATGGATTTCGATGCCGCTCTTCCAATCTCCCATGCGGCCCTCACTCCAGATTCACTTTGGATGATGAAATTGAGGTCAAGTGAAGCAATGGAATCTGGGCCTTATCCGCAGCGTCCCGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGCAGATTTGGTGCTACATGTCGGTTTAATCATCCCCCTAACAGGAAGCTGGTTATTGCCACTGCAAGGATGATGGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCAACATGCAAATTTCATCATCCTAGAGACCAAGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTAACGAATCAGAATGCACATATTATTTGAGAACAGGACAATGCAAATTCGGGAACACTTGCAAATTCAACCATCCCCAACCAAGTAATATGATGCTTTCATTACGAGGTTCTCCAGTTTATTCTGCAGTCCATTCTCCTACTACACTTGGTCAGCAGTCATATACAGGAGGAATTACAAATTGGCCGAGGGCATCTTATGTTCATAGTCCACGCTGGCAAGGCCCTTCAAGTTATACACCTTTAATTCTACCTCAGGGGATGGTTTCAGTGCCTGGATGGTCCTACAGTGGTCATATGGGATCAATCTCTACTTCAGACAGTCCACAGCAATCAATGGGAAATGATCAAGGTGAACTAGAAAATGCCGGATCTCATGGAGCATATTCTCAATTCCGTGCTGGAACTATTCCTGTAGGGTATTATGCGTTGCAGAGGGAGAGCATATTTCCTGAGAGACCTGGTCAGCCTGAATGTCAATTCTATATGAAGACAGGAGATTGCAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCACGTGATAGACAAATTCCAGCTCCTGATTGTATCTTGAGTCCCCTAGGCCTTCCTTTACGTCCTGGAGAGCCTTTGTGTGTCTTTTATTCACGCTATGGCATATGCAAATTTGGCCCAAGTTGCAAATTTGACCACCCAATGGGAGTATTCACGTATAATATATCTGCACCGCCTTCAGCGGATGCTCCTGGCAGGCGTCTGTTAGGATCTTCATCGGGAACGGCTGCATTAAATTTATCATCAGGAGGACTTGTTGAGTCAAGCTCAGCAAAGCCAAGGAGGCTTTCAGTATCAGAGGCTAGACAGATTCCTTCTGATGATGATGACATTGATGATGATAGATGA 1269 0.4547 MDFDAALPISHAALTPDSLWMMKLRSSEAMESGPYPQRPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLVIATARMMGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDQAGIAGRVALNILGYPLRPNESECTYYLRTGQCKFGNTCKFNHPQPSNMMLSLRGSPVYSAVHSPTTLGQQSYTGGITNWPRASYVHSPRWQGPSSYTPLILPQGMVSVPGWSYSGHMGSISTSDSPQQSMGNDQGELENAGSHGAYSQFRAGTIPVGYYALQRESIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRDRQIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISAPPSADAPGRRLLGSSSGTAALNLSSGGLVESSSAKPRRLSVSEARQIPSDDDDIDDDR* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1651 422 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872
Lja5g1651 422 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Lja5g1651 422 SUPERFAMILY CCCH zinc finger 331 355 IPR036855 GO:0046872
Lja5g1651 422 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 12 421 - -
Lja5g1651 422 PANTHER PROTEIN PHOSPHATASE RELATED 12 421 - -
Lja5g1651 422 Gene3D - 281 364 - -
Lja5g1651 422 Gene3D - 37 114 - -
Lja5g1651 422 SUPERFAMILY CCCH zinc finger 130 157 IPR036855 GO:0046872
Lja5g1651 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Lja5g1651 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 330 355 IPR000571 GO:0046872
Lja5g1651 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 309 IPR000571 GO:0046872
Lja5g1651 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Lja5g1651 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Lja5g1651 422 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Lja5g1651 422 SMART c3hfinal6 282 309 IPR000571 GO:0046872
Lja5g1651 422 SMART c3hfinal6 328 355 IPR000571 GO:0046872
Lja5g1651 422 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Lja5g1651 422 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Lja5g1651 422 MobiDBLite consensus disorder prediction 389 422 - -
Lja5g1651 422 Gene3D - 115 163 - -
Lja5g1651 422 SUPERFAMILY CCCH zinc finger 286 311 IPR036855 GO:0046872
Lja5g1651 422 MobiDBLite consensus disorder prediction 230 248 - -
Lja5g1651 422 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Lja5g1651 422 MobiDBLite consensus disorder prediction 389 403 - -
Lja5g1651 422 ProSiteProfiles Zinc finger C3H1-type profile. 328 356 IPR000571 GO:0046872
Lja5g1651 422 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Lja5g1651 422 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Lja5g1651 422 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Lja5g1651 422 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1651 Lja-Chr5 17901868 17907224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1651 19 422 C2H2 Transcription Factor Family AT3G02830 59.716 1.96e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja5g1651 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1651 - - gmx:100786261 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1651 5 17901868 17907224 Lja5g1651 5 17901868 17907224 ECH