Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1636 ATGAATTGCTTCCCGTGTTGCACCGCCCAGAAAAGTAAGAAAAGCAGGGAGCATGGTTCTCCAACATCCAAGGAAATTGTTCCAGGAAAAACACCAGATATGAAGAAACCTAGAGGAGATGAGGCAAATCAATTGGACACTGAAAATGTTAATGCACAACATTTCACATTCCGAGAGCTAGCAACCGCCACAAAGAATTTTCGTCAGGAATGCCTCCTGGCTGAAGATAGCTTTGGCAGAGTGTATAAAGGGACAATTCCTGCAACAGGGCAGGGTGTGGCCGTGAAGCAACTTGACAGACATGGAACACAAAGCACACAAAGTTATAATGAATTTGTAGCTGATGTTTCAGAGCTGAGTCTCTTGCACCATGAAAATTTGGTGAATCTCATTGGTTATTGTGCTGATGGGGACCAACGTCTCTTGGTGTATGAATTCGTTCTTGGGTGTACTCTAGAAGAACGTCTTTTTGAAAATAAAACAGGGCAACCTGCATTGAACTGGTTCGAGAGAATGAAAGTGGCAGCTGGTGCTTCTAAAGGGCTTGAATACTTACATGAAAGTGCTAATCCCCCAGTTATATACCGGGACCTGAGATCCTCTCACATCATGCTGGATGATGATTTTAATGTGAGACTGTCCGATTTTGGAATGATAAAACTTTCTGGGGGAGACAAGATGAACCATGCACCGCCAAGAATTATGGGTACCTATGGTTACTGTGCTCCAGAGTATGTAAGAACAGGTCATGTCACCTTAAAATCAGATGTGTATAGTTTTGGAGTCGTCTTGCTAGAGCTCATAACTGGAAGACGAGTCATTGACACCACAAGACCAAATGAAGAGCAAAACCTCGTTGCATGGGCACAACACTTCTTCAGGGACCCAAAAAGATATCCAGATATGGCAGATCCACTTATCAATAAGCAATTCCCAGAGAAGGATCTGAATCAAGCTGTTGCAATTGCAGCTATGTGCTTACAAGAGGAAGCAGAAGCCCGTCCCTTGATCAGTGATGTTGTAACAGCTTTGAGCTTTCTTTCCATGGTTCCTCCAGATGTTATTCCACCCCCTCTCCACCCTGCTACCTCTATCTCTAAGAAGAGTAGTGCTGGTGAAAGCCAAGGAGAAAGTGGAAGTGAAAGAGAGAGCGAAAGTGAAAGTGGGAGTGGAAGTGGAAGCGGAAGCGAATCAGAAGAATCTGATAGTTCAGAAGATGAGAAAGGAAAAGGTTCTAAAAAACATGATGATGATACAGCTAAAACAAAATACCAAGAAAGTGATGTCATAGACATTGAAGATGATTATTACAAGGATGAAAACCCACATGGGTCTAATGGCCTACCTATGTTTTCCCCCAAATCGAGCCGCAAAAGCAGCACGCGAACGAGGAAAGGAACACTTAGTTCAGATTCAGGAATTGGAAGTGTTTCTTCCAGCAGCAAAAGCGGTAGGAAATCACGTGGCGCGGTTGGTAATAATTTAAGCCAGAAGAAGACTAGCCGAAAATCTTCTTCTGTAAGCAAGAAGAGCAGCCGAAAATCTTCCACAAAGGATTTAAGCCGTGGAAAGTCCTGTGTTAGCAGAAGTAGTGTGGGGTCAGAGGATGGAGATGTTCTGTTAGATGGTAGCAGCAGCAGAATATCACAAGGATACATATCTTTTGGCCTTACCAGTGGAGTGAGTGTTCAATCAGATCTCGACCACAACAGCAGAACTGAAGAAGAGAGCATACACTTAGATCATGAATGCAGCATAGGATCAGATGAGGAAAGTGACCATCCTTTCGACATGATTAGCAGCAGTGGATCAGATAACGGAAGTGTTCATTCAAGATAA 1839 0.4345 MNCFPCCTAQKSKKSREHGSPTSKEIVPGKTPDMKKPRGDEANQLDTENVNAQHFTFRELATATKNFRQECLLAEDSFGRVYKGTIPATGQGVAVKQLDRHGTQSTQSYNEFVADVSELSLLHHENLVNLIGYCADGDQRLLVYEFVLGCTLEERLFENKTGQPALNWFERMKVAAGASKGLEYLHESANPPVIYRDLRSSHIMLDDDFNVRLSDFGMIKLSGGDKMNHAPPRIMGTYGYCAPEYVRTGHVTLKSDVYSFGVVLLELITGRRVIDTTRPNEEQNLVAWAQHFFRDPKRYPDMADPLINKQFPEKDLNQAVAIAAMCLQEEAEARPLISDVVTALSFLSMVPPDVIPPPLHPATSISKKSSAGESQGESGSERESESESGSGSGSGSESEESDSSEDEKGKGSKKHDDDTAKTKYQESDVIDIEDDYYKDENPHGSNGLPMFSPKSSRKSSTRTRKGTLSSDSGIGSVSSSSKSGRKSRGAVGNNLSQKKTSRKSSSVSKKSSRKSSTKDLSRGKSCVSRSSVGSEDGDVLLDGSSSRISQGYISFGLTSGVSVQSDLDHNSRTEEESIHLDHECSIGSDEESDHPFDMISSSGSDNGSVHSR* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1636 612 MobiDBLite consensus disorder prediction 1 42 - -
Lja5g1636 612 Gene3D Phosphorylase Kinase; domain 1 31 146 - -
Lja5g1636 612 MobiDBLite consensus disorder prediction 358 543 - -
Lja5g1636 612 PANTHER OS07G0668900 PROTEIN 1 464 - -
Lja5g1636 612 Pfam Protein tyrosine and serine/threonine kinase 72 343 IPR001245 GO:0004672|GO:0006468
Lja5g1636 612 MobiDBLite consensus disorder prediction 597 612 - -
Lja5g1636 612 MobiDBLite consensus disorder prediction 11 42 - -
Lja5g1636 612 MobiDBLite consensus disorder prediction 363 377 - -
Lja5g1636 612 MobiDBLite consensus disorder prediction 568 596 - -
Lja5g1636 612 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1636 612 MobiDBLite consensus disorder prediction 563 612 - -
Lja5g1636 612 MobiDBLite consensus disorder prediction 403 441 - -
Lja5g1636 612 Gene3D Transferase(Phosphotransferase) domain 1 150 350 - -
Lja5g1636 612 MobiDBLite consensus disorder prediction 448 502 - -
Lja5g1636 612 PANTHER RECEPTOR-LIKE KINASE LIP1 1 464 - -
Lja5g1636 612 SUPERFAMILY Protein kinase-like (PK-like) 53 367 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1636 Lja-Chr5 17561910 17565674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1636 1 358 Glycoside Hydrolase AT3G07070 57.682 2.68e-145 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lja5g1636 PK_Tyr_Ser-Thr 7.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1636 - - gmx:100804526 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1636 5 17561910 17565674 Lja5g1636 5 17561910 17565674 ECH