Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1623 ATGGAAACCAATGAGAACCAAGTGCGGTCACTGTTCGAGTCGAACAACAACACCACCAACACCAACACCGTCACGGCGGCGAACGGCTTGTTCGGGAACAGTGATGATGGGTCCCACTCTCAACCTAATTCTGCGCCGGAGAAGAAGAAGCGAGGCCGCCCTAGGAAGTACCAGTCCCCTGAGGAAGCTCTCGCCGCTAGGAAAGCTGCCGCCGCCGCTGCTTCTGCTGCTGCTGCTGCGTCCTCGTATCAACCTCCCATCCACACCAAGAAACCCCGCTCCTTTGATCTAGGCAATGCAGGACAGAGCTTCACTCCGCACATTGTTCCTGTTGCTGATGGCGAGGACGTTGGCCAAAAAATTATGTTGTTCATCCAACAAAGTGGGCGTGAGATGTGCGTTCTGTCTGCATCTGGTTCCATCTCTAATCCAACTCTTCGTCAGCCAGCAACTTCAGGAGGCAATATTTCTTATGAGGGTCAGTTTCACATTATATCACTTACTGGTTCCTATGTCCGTAATGAAGTTGGAGGTCGGAGTGGTGGTCTCAGTGTATGCTTATCTAATTCAGATGGGCAGCTCGTAGGTGGAAGCATTGCTGGACCCCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTGTTATTGACCCCATTAAGGACACTAGTGCTGGAATAAAAGGTGATGTTTCTACCAGCAAGTTACCACCACCAGTTGAACCAGCGTCAAATTTAGGTTTCCGCCCGGCAGTTGACTCTTCTGGTGGGAATACATTCCGGGGAAATGAGGAGCATCAAGCTATTGGGGGAAATCATTTCATGTTTCAGCAATCCCATCCTGTGGACTGGGGAAGTCCAGATTCAAGAAATGTTGGCTTTGAACTGTCAGGAAGAACAGGTCATGGAGCACACCAGTCTCCTGAGAATGGGGACTATGATCAACTCACTGATTGA 960 0.5 METNENQVRSLFESNNNTTNTNTVTAANGLFGNSDDGSHSQPNSAPEKKKRGRPRKYQSPEEALAARKAAAAAASAAAAASSYQPPIHTKKPRSFDLGNAGQSFTPHIVPVADGEDVGQKIMLFIQQSGREMCVLSASGSISNPTLRQPATSGGNISYEGQFHIISLTGSYVRNEVGGRSGGLSVCLSNSDGQLVGGSIAGPLKAAGPVQVIVGTFVIDPIKDTSAGIKGDVSTSKLPPPVEPASNLGFRPAVDSSGGNTFRGNEEHQAIGGNHFMFQQSHPVDWGSPDSRNVGFELSGRTGHGAHQSPENGDYDQLTD* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1623 319 Gene3D - 106 229 - -
Lja5g1623 319 CDD DUF296 105 216 IPR005175 -
Lja5g1623 319 MobiDBLite consensus disorder prediction 286 319 - -
Lja5g1623 319 MobiDBLite consensus disorder prediction 229 249 - -
Lja5g1623 319 MobiDBLite consensus disorder prediction 42 62 - -
Lja5g1623 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 311 IPR039605 GO:0003680
Lja5g1623 319 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 217 - -
Lja5g1623 319 MobiDBLite consensus disorder prediction 1 41 - -
Lja5g1623 319 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 217 IPR005175 -
Lja5g1623 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 7 311 - -
Lja5g1623 319 MobiDBLite consensus disorder prediction 1 64 - -
Lja5g1623 319 ProSiteProfiles PPC domain profile profile. 101 240 IPR005175 -
Lja5g1623 319 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1623 Lja-Chr5 17412835 17417524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1623 39 316 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 47.692 6.51e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1623 - - gmx:100809675 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1623 5 17412835 17417524 Lja5g1623 5 17412835 17417524 ECH