Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1622 ATGATGATGATTATGAGAAGAACCCTCCTTGTTCTATTGTTTCTGCTTTCTACTCATGTTCTCTCTGGTTCTCCTGAATTTGACCACTGCAACTGTGATGATGATGATGATGATGGAGGTTTTTGGAGCATACACAGCATCCTCATCGGCCAAAAGGTCAGTGACTTCTTCATCGCCATTGCATATTTCTCCATCCCCATTGAAATCCTCTACTTCGTTAACCGCTCCAATGTCCCATTCAAATTGCTCTTCCTTCAATTCATGGCCTTCATAATCCTCTGTGGCCTCACCCATTTGCTCACTGCGTACTCTTCTCACGCGCCACCCTCTTTCCATTTGGTCCTCTCCCTCACCGTGGCTAAGTTCCTCACTGCTCTTGTCTCATGCGCCACCGCCTTAACCCTTCCACCTCTCATCCCTCTCCTTCTCAGAATCAAGGTCAGGGAGATTTTCCTGAAGCAGAATGTGATGGAGTTGGGTTTAGAAGTTGGGATGAGGAAGAAATTGAAGGAAGCTAGCTTGCATGTTCGGATGCTCACTAGGGAAATCAGAAAATCTCTTGATAAACACACCATTTTGTACACCACCCTTGTTGAGCTTTCTAAGGCATTGGATTTGTATAATTGTGCAGTTTGGATGCCAAATGAGGAGAGGAGAGAAATGTACTTGACCTATGAGTTGAAACCAAACAATGCTAAGAATTTTCAGAACTCTATTCCTATGAATGATCTAGATGTGTTGGAGATAAGAAAAACTAAATGGGTGAAGATTTTGAGGCATGACTCTGCATTAGGGGCTGCAAGCAGTGGTGGGTCAGGTTCTAGGTATTTTGGCGCTGTAGCGGCGGTTCGGATGCCGTTGCTTCATGTGTCGAATTTCAAAGGAGGGACGCCGGAGTTCGTTGAGACGTGTTATGCTATACTGGTTTTGGTTCTTCCAAGTTCAAATTCAAGGGTTTGGACTAATCAAGAGATAGGGATAGTTGAAGTGGTTGCTGATCAGGTGGCTGTGGCGTTATCTCATGCATCGGTTCTTGAAGAGTCTCAGCTGATGAGACAGAAACTCGAAGAGCAGAACCGCGCTTTGCAACAGTCTAGGCAAAATGCAATGATGGCCAGCCTGGCAAGGAAGTCATTTCAGACAGTGATGAGCCATGGATTGAGGAGGCCTATGCATTCAATTCTGGGGATGCTTTCATTGTTTCAGGAGGAGGATAATATCATGAGATCTGAACAGAAGATTATTGGTGACACCATGTTGAAGGTTGGGAAAGTGCTCTCAAGTTTGATCAATGATGTGATGGAGATTTCGAAAAATGATAACAGAGGCCTCTGGTTGGAGATGAAACCTTTCCATCTGCATTCCATGTTGAAGGAAGCTGTTTGTGTTGCTAAGTGCTTGTGTGTGTATGAGGGTTTAGGTTTTGAAATTGATGTCCAGAGGGCGTTGCCTGAACAAGTAATAGGCGATGAGGCGCGGGTTTTTCAAGTGATTTTGCACATAATTGGGTATTTATTGAGCTTGCATGGAGGGAATCTCACTTTTCGAGTTTTTCTTGGAGGTGATGATGGGGATAAGGATGATATAAGTTTTGGAATGTGGATGTCTAACCGTCAAATTCAGGATGTGTATATAAAATTTGATTTTCAGATTGCTGGTTGTTCTCAGTCGGATGAATCAACTTCAACCAATCATTGTACTGGTAGGAGGCACTACAACAATGAACCTGAGGAGGGCCTGAGCTTCAACATGTGCAAGAAGTTGGTACAGATAATGCAAGGTAATATATGGATATCAACCTCTCAGGGTTTAGTGCAAGGCATGACCCTTCTTCTGAAATTCCAGAAAGGACCATCGCTTGTAAAATCCATGTATGCACCCAAAGACTCTTCAAACTCACAGTTCAGAGGCCTTAAGGTTCTGCTAGCCGATGATGACGGTGTGAACCGGGGCGTGACGAAGAAGTTACTTGAGAAGCTGGGTTGCCAAGTAACTGCAGTTTCATCAGGGTTTGAGTGCCTGAGCGCCGTAAGAGGCTCCGGAAACTCATTCAGGATCATACTGTTGGATCTTCACATGCCTGAAATGGACGGTTTTGAAGTGGCGGCGAGGATTCAGAACTTTAATAGGCCGAATTGGCCCTTGATTGTCGCCTTCATAGCAAGTGCAGAAGAGCATGTGAAGGAGAAGTGCCTGCTAGCGGGAATGAATGGGTTGATTCGGAAACCTATCATCCTTCATGAGATTGCAGATGAACTTAGATCTGTCCTCCAACGTGCAGGTGAAAAACTTTAG 2295 0.4462 MMMIMRRTLLVLLFLLSTHVLSGSPEFDHCNCDDDDDDGGFWSIHSILIGQKVSDFFIAIAYFSIPIEILYFVNRSNVPFKLLFLQFMAFIILCGLTHLLTAYSSHAPPSFHLVLSLTVAKFLTALVSCATALTLPPLIPLLLRIKVREIFLKQNVMELGLEVGMRKKLKEASLHVRMLTREIRKSLDKHTILYTTLVELSKALDLYNCAVWMPNEERREMYLTYELKPNNAKNFQNSIPMNDLDVLEIRKTKWVKILRHDSALGAASSGGSGSRYFGAVAAVRMPLLHVSNFKGGTPEFVETCYAILVLVLPSSNSRVWTNQEIGIVEVVADQVAVALSHASVLEESQLMRQKLEEQNRALQQSRQNAMMASLARKSFQTVMSHGLRRPMHSILGMLSLFQEEDNIMRSEQKIIGDTMLKVGKVLSSLINDVMEISKNDNRGLWLEMKPFHLHSMLKEAVCVAKCLCVYEGLGFEIDVQRALPEQVIGDEARVFQVILHIIGYLLSLHGGNLTFRVFLGGDDGDKDDISFGMWMSNRQIQDVYIKFDFQIAGCSQSDESTSTNHCTGRRHYNNEPEEGLSFNMCKKLVQIMQGNIWISTSQGLVQGMTLLLKFQKGPSLVKSMYAPKDSSNSQFRGLKVLLADDDGVNRGVTKKLLEKLGCQVTAVSSGFECLSAVRGSGNSFRIILLDLHMPEMDGFEVAARIQNFNRPNWPLIVAFIASAEEHVKEKCLLAGMNGLIRKPIILHEIADELRSVLQRAGEKL* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1622 764 SMART HisKA_10 375 442 IPR003661 GO:0000155|GO:0007165
Lja5g1622 764 Pfam Response regulator receiver domain 640 752 IPR001789 GO:0000160
Lja5g1622 764 SUPERFAMILY GAF domain-like 191 342 - -
Lja5g1622 764 SUPERFAMILY CheY-like 634 759 IPR011006 -
Lja5g1622 764 Coils Coil 345 372 - -
Lja5g1622 764 SMART REC_2 638 753 IPR001789 GO:0000160
Lja5g1622 764 CDD REC_ETR-like 638 753 - -
Lja5g1622 764 PANTHER ETHYLENE RECEPTOR 9 757 - -
Lja5g1622 764 ProSiteProfiles Histidine kinase domain profile. 382 618 IPR005467 -
Lja5g1622 764 Gene3D - 340 440 - -
Lja5g1622 764 PIRSF Ethylen_sen_hybr_HK 3 764 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lja5g1622 764 ProSiteProfiles Response regulatory domain profile. 639 757 IPR001789 GO:0000160
Lja5g1622 764 Pfam His Kinase A (phospho-acceptor) domain 377 441 IPR003661 GO:0000155|GO:0007165
Lja5g1622 764 Pfam GAF domain 190 339 IPR003018 GO:0005515
Lja5g1622 764 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 360 441 IPR036097 GO:0000155|GO:0007165
Lja5g1622 764 CDD HATPase_ETR2_ERS2-EIN4-like 483 612 - -
Lja5g1622 764 Gene3D - 638 763 - -
Lja5g1622 764 CDD HisKA 375 438 IPR003661 GO:0000155|GO:0007165
Lja5g1622 764 SMART gaf_1 188 349 IPR003018 GO:0005515
Lja5g1622 764 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 757 - -
Lja5g1622 764 Gene3D - 444 616 IPR036890 -
Lja5g1622 764 Gene3D - 172 339 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1622 Lja-Chr5 17407025 17410692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1622 21 762 Miscellaneous Gene Families AT3G04580 58.598 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja5g1622 GAF 1e-08 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1622 K14509 - gmx:100811462 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0150 1 1295110 1299488 Lja5g1622 5 17407025 17410692 ECH
Lja5g1622 5 17407025 17410692 Lja5g1622 5 17407025 17410692 ECH