Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1620 ATGGCGAATCGGTGGTGGACTGGCTCGATGGGTCTTGGCGGGGTTGATGACAATCCGGACAACTCTTCCCCCATGGGAAAACCGGATCTGGGTTTCTCCATGAACAACAACGACGGTGGGAACCAAAGCGTTGGTGGTGGTGAGAAAGAAGATGAGAAAGAAAGCAGCGAGGAGCCAAGAGATGGAGCCATTGTTTCTGGATCCACACGTCGCCCGAGGGGACGTCCGGCAGGATCGAAGAACAAGCCAAAGCCGCCGATATTCGTGACCAGGGACAGCCCTAACGCCCTCCGGAGCCATGTCATGGAGGTTGCCGCCGGCGCGGACATCGCGGACAGCATGGTGCAGTTCGCCAGGAGGCGCCAGAGGGGGGTTGCCATCCTCACAGGCAGCGGCACCGTGGTCAACGTCTCGCTCCGGCAGCCAACGGCGCCAGGTGCGGTGGTGTCGCTTCAGGGAAGGTTTGACATACTGTCCTTGACCGGCTCTGTGCTCCCAGGACCGGCCCCACCAGGCGCTCCTGGCCTAACCATCTACCTTGCCGGAGGGCAGGGGCAGGTGGTCGGTGGAGCTGTGGTAGGGCCGCTGGTAGCTGCTGGGCCGGTTATGATAATGGCGGCTACTTTTTCCAATGCAACGTATGAGAGGTTGCCCTTGGAGGAGGGTGATCAGGAACAAGGCGGTTGCTCTCCTCCTCCCGGGATGGGACAGCCGCCGGCCGGAGTGTCTGCGGGAGAAGCCTCGTCGGCGATGGCGGGGTACAATAATCTCCCTCCCAGTTTAACTCTTCCAAATGGGCAACAGCTGAACCCTGATCAAGCTTATTCAACTTGGGGACATGGTCATGGTAGATCACCCTACTGA 864 0.5995 MANRWWTGSMGLGGVDDNPDNSSPMGKPDLGFSMNNNDGGNQSVGGGEKEDEKESSEEPRDGAIVSGSTRRPRGRPAGSKNKPKPPIFVTRDSPNALRSHVMEVAAGADIADSMVQFARRRQRGVAILTGSGTVVNVSLRQPTAPGAVVSLQGRFDILSLTGSVLPGPAPPGAPGLTIYLAGGQGQVVGGAVVGPLVAAGPVMIMAATFSNATYERLPLEEGDQEQGGCSPPPGMGQPPAGVSAGEASSAMAGYNNLPPSLTLPNGQQLNPDQAYSTWGHGHGRSPY* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1620 287 MobiDBLite consensus disorder prediction 28 43 - -
Lja5g1620 287 MobiDBLite consensus disorder prediction 1 94 - -
Lja5g1620 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 211 IPR005175 -
Lja5g1620 287 MobiDBLite consensus disorder prediction 249 275 - -
Lja5g1620 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 8 287 - -
Lja5g1620 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 287 IPR014476 GO:0003680
Lja5g1620 287 MobiDBLite consensus disorder prediction 220 287 - -
Lja5g1620 287 Gene3D - 97 226 - -
Lja5g1620 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 222 - -
Lja5g1620 287 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Lja5g1620 287 MobiDBLite consensus disorder prediction 45 60 - -
Lja5g1620 287 CDD DUF296 98 165 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1620 Lja-Chr5 17398506 17400110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1620 1 219 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 62.185 2.76e-83 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1620 - - gmx:100795097 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1620 5 17398506 17400110 Lja5g1620 5 17398506 17400110 ECH