Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1611 ATGTGTGAAGCCTTGAAAAGCCAGTACCAACTCTGCGAGGAAATCGGACGCGGCCGTTTCGGCACCATCTTCCGATGCTTCCACCCCATCTCCACCGACACCTTCGCCGTCAAACTCATCGATAAATCCCTCCTCGCCGACTCCACTGACCGTCACTGCCTCGAAAACGAGCCCAAGTACATGTCCCTCCTCTCCCCTCACCCTAACATTCTCCAGATCTTCGACGTCTTCGAAGACGACGACGTTTTATCCATGGTGATCGAGCTTTGCCAACCCTTAACCCTCCTCGACCGCATCGTCGCCGCTAATGGAACCTCCATCCCGGAGGTTGAAGCGGCTGGACTGATGAAGCAGCTTCTTGAAGCGGTGGCGCACTGTCACCGCCTTGGAGTTGCGCACCGTGATGTGAAACCGGATAATGTTTTGTTTGGTGGTGGTGGAGATCTGAAACTGGCGGATTTTGGTTCGGCGGAGTGGTTTGGTGACGGGAGGAGGATGAGTGGGGTGGTTGGGACGCCGTATTATGTTGCGCCGGAGGTTTTGATGGGGAGGGAGTATGGGGAGAAGGTGGATGTGTGGAGCTGTGGGGTGATTTTGTATATAATGTTGAGTGGGACGCCGCCGTTTTACGGTGATTCTGCGGCGGAGATTTTTGAGGCGGTTATTAGGGGGAATCTCAGGTTTCCTTCTAGAATCTTCCGGAATGTTTCTCCTGCTGCTAAAGATCTCTTGAGGAAGATGATTTGCAGAGACCCTTCTAACAGAATCTCAGCTGAACAAGCATTGAGGCACCCTTGGTTCTTGAGTGCTGGTGACACTGTGAATGTGACATGA 834 0.53 MCEALKSQYQLCEEIGRGRFGTIFRCFHPISTDTFAVKLIDKSLLADSTDRHCLENEPKYMSLLSPHPNILQIFDVFEDDDVLSMVIELCQPLTLLDRIVAANGTSIPEVEAAGLMKQLLEAVAHCHRLGVAHRDVKPDNVLFGGGGDLKLADFGSAEWFGDGRRMSGVVGTPYYVAPEVLMGREYGEKVDVWSCGVILYIMLSGTPPFYGDSAAEIFEAVIRGNLRFPSRIFRNVSPAAKDLLRKMICRDPSNRISAEQALRHPWFLSAGDTVNVT* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1611 277 SUPERFAMILY Protein kinase-like (PK-like) 5 270 IPR011009 -
Lja5g1611 277 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 276 - -
Lja5g1611 277 CDD STKc_CAMK 8 266 - -
Lja5g1611 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lja5g1611 277 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Lja5g1611 277 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 276 - -
Lja5g1611 277 Pfam Protein kinase domain 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1611 277 PIRSF ILK 3 263 - -
Lja5g1611 277 ProSiteProfiles Protein kinase domain profile. 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1611 277 Gene3D Transferase(Phosphotransferase) domain 1 94 276 - -
Lja5g1611 277 SMART serkin_6 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1611 277 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1611 Lja-Chr5 17324912 17326322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1611 3 273 EF-hand Containing Proteins AT1G50700 40.146 1.14e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja5g1611 Pkinase 1.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1611 - K08794 gmx:548089 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0154 1 1344628 1346300 Lja5g1611 5 17324912 17326322 ECH
Lja5g1611 5 17324912 17326322 Lja5g1611 5 17324912 17326322 ECH