Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1609 ATGGAAAACCAAACAATCAATCCGCAGCTTCTGGGAACTAATCAACAACCTTCTTCAACGACTCAGGTTGAAAGAAGGCTCATAGAAAAAAAAAACAGAAGAAACCAGATGAAGATCCTCTATTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCTAAGGAAGCGGTGCCATTGCCTGACCAAATAGATGAGGCCATCAACTACATCAAGAGCCTTGAGGAAAAGATGAAGATGGCTCAGGAGAAGAAAGAAAGCTTAGGTGGAAGTAATAAGAGATCCCGTGGTAGCTGTTCTAGTTCTATTTCTGCAACGGCGGTTTCAAAATCGCCACAACTTGAGGTTCATGAAACGGGTTCATCTTTAGAAGTTGTTCTCACATGTGGGTTGGACAACCAGTTCATTTTTTATGAAATCATCCGAATACTGCAAGAAGAGAACATTGATGTCAGGAGTGCCAATTCCTCAATGGCTGGAGATTCAATGCTTCATGTGGTGCATGCTGAGATTCCTCAATTTTGA 522 0.4176 MENQTINPQLLGTNQQPSSTTQVERRLIEKKNRRNQMKILYSKLNSLLPNYNPKEAVPLPDQIDEAINYIKSLEEKMKMAQEKKESLGGSNKRSRGSCSSSISATAVSKSPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDVRSANSSMAGDSMLHVVHAEIPQF* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1609 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 91 IPR036638 GO:0046983
Lja5g1609 173 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 17 170 - -
Lja5g1609 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 21 73 IPR011598 GO:0046983
Lja5g1609 173 MobiDBLite consensus disorder prediction 1 22 - -
Lja5g1609 173 Coils Coil 63 90 - -
Lja5g1609 173 MobiDBLite consensus disorder prediction 78 103 - -
Lja5g1609 173 Gene3D - 12 102 IPR036638 GO:0046983
Lja5g1609 173 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 17 170 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1609 Lja-Chr5 17302267 17303749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1609 23 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.000 2.54e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1609 - - gmx:100805461 219.164