Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1603 ATGGCGACACCGGCTTCCTCCACCGCATTGCAATCACAATTCACCTATTCCGACGCCTCCTACTTCCCCGTCCCCTTCCACCTTCAACAACCCGCAACCACTCACTACGCCGCGCCTCCTATCGTCGGTCCCCTTCCTCCGCCACCGGTAGTCGCCGCCGCGTACACCGTGCCACAATATCCGGCGCACCAGTTGTTTGAGAGGGATGCGCAGATAATAACACCGGAGGCTCTTGAGAGTGTCAAGGCGGCGATCGCGAGAAGTGATGTGGAGCACAAGGCTGATACCAAGAAGAAAGCGGTTCCTCGCAAAGCTGCTGGACAGACATGGGAGGATCCTGTTCTTGCAGAGTGGCCTGAAGATGACTATCGGCTCTTTTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAACATCGCCCGGGTTGTCAGAGATAAGAGGACCGGAAAAACAAAGGGTTATGGGTTTGTAAGTTTTGCCAATCCTGCTGACCTTGCAGCTGCTCTCAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATAAAACTACGAAAGAGTAAATGGAAGGAGAGGACAGATTACGAGGCACTGGAAAAACAGAAGAACCAATTACACAAGAAACCGAAATTGCCAAGGAAGGGTGTTCTACACAAGTGA 696 0.5 MATPASSTALQSQFTYSDASYFPVPFHLQQPATTHYAAPPIVGPLPPPPVVAAAYTVPQYPAHQLFERDAQIITPEALESVKAAIARSDVEHKADTKKKAVPRKAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQLHKKPKLPRKGVLHK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1603 231 SUPERFAMILY RNA-binding domain, RBD 107 203 IPR035979 GO:0003676
Lja5g1603 231 SMART rrm1_1 124 197 IPR000504 GO:0003723
Lja5g1603 231 PANTHER RNA-BINDING PROTEIN 42-LIKE 35 231 - -
Lja5g1603 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Lja5g1603 231 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 35 231 - -
Lja5g1603 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 195 IPR000504 GO:0003723
Lja5g1603 231 Gene3D - 74 215 IPR012677 -
Lja5g1603 231 MobiDBLite consensus disorder prediction 211 231 - -
Lja5g1603 231 CDD RRM_RBM42 117 199 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1603 Lja-Chr5 17272930 17277918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1603 125 212 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 1.99e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1603 K25079 - gmx:100807693 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1603 5 17272930 17277918 Lja5g1603 5 17272930 17277918 ECH