Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1600 ATGAGGATTATGATCAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTCAAAGCTGCTTGGGCTCGTATCTCTTCCCTCCTCGTTCGCAAATCTGCTAAGCAATGCAAGGCTCGTTGGCATGAGTGGCTTGATCCTTCCATCAAAAAGTGGACTAGAGAAGAGGATGAGAAGCTTCTTCATCTTGCTAAGCTTATGCCCACCCAATGGAGAACAATAGCGCCAATTGTAGGCCGCACCCCTTCCCAATGCCTTGAGCGATACGAGAAGCTTCTTGATGCAGCCTGTGTGAAGGATGACAATTATGAACCCGGTGATGATCCTCGGAAATTGTGTCCTGGAGAGATTGATCCGAATCCGGAGTCAAAACCTGCACGCCCGGATCCTGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCTGAAGCGCGAGCCCGATTAGCCAACACAAAGGGAAAGAAGGCAAAAAGGAAGGTTAGGGAAAAACAACTTGAGGAAGCCCGGAGGCTCGCATCTTTACAAAAGAAGAGAGAGCTGAAAGCGGTTGGAATTGATATCAGGCGCCGGAATAGAAAAAGGAGAGGGATAGACTACAATGCAGAAATTCCATTTGAGAAGAGGCCTCCTCCGGGGTTTTTTGATATTACAGATGAAGATAGACCGGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAGGGAAAAAGGAGGGTTGACGTCGAGGCACAGTTGAGAAAGCAGGACATTGCAAAAAATAAAATTGCTGAGGGGCAAGATGCGTCGTCTGCTATACTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAACTGATGCTTCCGCCACCCCAGATCTCTGATCAGAAATTGGATGAAATTGCAAAGCTGGGTTACGCCGGTGATCTTGCAGGGAATGAGGAACTTGCAGAAGGTAGTGGTGCAACACATGCTCTTCTGGCTAATTATGCACAAACACCTGGCCGAGGAATGACTCCTTTACGAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGATTAAGGGAGTCTCAGACACCATTGTTAGGAGGAGAGAACCCAGAAATTGGCATGACGCCGACAAGAAGTGAATTTTCTTTAGGCATGGCACCAAAGGGAACTCCTCTTAGAGATGAGCTCCGTATTAATGATGACATGAATACACCTAACAGTGCTAAACTTGAGCAACAGAGACAGGCTGATCTGAGAAGAAGTTTACGCACTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGATGCTGAAGAGCTAGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAGGCAGAAGAAGAGGCACGACAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGCAACTTCCTAGGCCTCCTGCTGCATCATTGGAGCTTATTAGATATTCCTTGATGAGAGATGATGGAGACAAGAGTTCCTTTGTTCCACCAACCTCTATGGAGCAAGCGGATGAGTTTATTAGAAGGGAACTTCTTACTTTACTCGAGCATGACAATGCTAAGTATCCACTTGATGACAAAGTGGGTAAGGAGAAAAAGAAACGACCTAAGAATGCGGCAAATGGGTCTGTTGTCCCTCTGATAGAAGATTTTGAGGAAGATGAGATGCAAGAGGCTGACAGGTTGATAAAGGAAGAGGCCCGGTATCTTTGTATTGCGATGGGGCATGGAAGTGAACCTCTTGATGAATTTATTGAAGCACATAATACTTGCCTTAATGATCTTATGTACTTTCCCACTCGTGAAGCCTATGGTCTCTCGAGTGTTGCTGGGAACATGGAAAAGGTAACATCTTTGCAGCATGAATTTGAGAGTGTGAGAAATAAGTTGGAAGATGGAAAGGTGAAGATAGCACGGCTTGAGAAGAAGGTGATAGTTTTGACACAAGGTTATGAGGTGAGAGCAAAGCAAAGCCTTGGGCCCCAAATTGAGGCTACTTTCAGGCAGATGGACGTAGCAGCAACAGAATTTGAATGCTTTATAGCTTTGCAAAAACAGGAGCAATTAGCTGCATCACACAGGATAAACAATCTCCGGGATGAAGTGCAGAAACAAAAGGAGCTTGAGAAAACCTTACAAAAGAAGTATGTGAGTCTAATAGAGGAGCTGGAAAAGAAACAAGCTATGATGGAGCAATACAGGGCACTAGCACAGCAGCAAGAAGAAATCGAGGCGCTAAGTCATGCTCATGAGTCAACTGAGACCGCAGCCAATGAAACTGATACAGAGAATTGTAAAGACATGCCTCACTCGCTAGAGCACGGAAGTGTTGTAGCAGATGATCCTTCTCATGTTGGAACTGCTAACCAGCAAGTAGACATTGTGCAAGATCAGGGAACTTCCAGCCCCAAAAAGGACATGGATGTGGATTCTGATGAAGTGCACGAAGATGTCAAATTGCCGGATGCCACAATTGCAGCAGAGAATGACAATGGAAAAGTGGAAGGTACTGGTACTGACGGTGATGCTTACAATGGAGAGAACACGCTAGACATGGGTGCTGCAGTGGAAATTAGTACTAGTGAGGGAAGCGAGGATAAGGTGTAG 2685 0.4544 MRIMIKGGVWKNTEDEILKAAWARISSLLVRKSAKQCKARWHEWLDPSIKKWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLCPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKVREKQLEEARRLASLQKKRELKAVGIDIRRRNRKRRGIDYNAEIPFEKRPPPGFFDITDEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAEGQDASSAILHANKLNDPETVRKRSKLMLPPPQISDQKLDEIAKLGYAGDLAGNEELAEGSGATHALLANYAQTPGRGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPEIGMTPTRSEFSLGMAPKGTPLRDELRINDDMNTPNSAKLEQQRQADLRRSLRTGLGSLPQPKNEYQIVMQPVPEDAEELEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRQLPRPPAASLELIRYSLMRDDGDKSSFVPPTSMEQADEFIRRELLTLLEHDNAKYPLDDKVGKEKKKRPKNAANGSVVPLIEDFEEDEMQEADRLIKEEARYLCIAMGHGSEPLDEFIEAHNTCLNDLMYFPTREAYGLSSVAGNMEKVTSLQHEFESVRNKLEDGKVKIARLEKKVIVLTQGYEVRAKQSLGPQIEATFRQMDVAATEFECFIALQKQEQLAASHRINNLRDEVQKQKELEKTLQKKYVSLIEELEKKQAMMEQYRALAQQQEEIEALSHAHESTETAANETDTENCKDMPHSLEHGSVVADDPSHVGTANQQVDIVQDQGTSSPKKDMDVDSDEVHEDVKLPDATIAAENDNGKVEGTGTDGDAYNGENTLDMGAAVEISTSEGSEDKV* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1600 894 PANTHER - 1 378 - -
Lja5g1600 894 PANTHER - 376 801 - -
Lja5g1600 894 ProSiteProfiles Myb-like domain profile. 51 93 IPR001005 -
Lja5g1600 894 Coils Coil 649 669 - -
Lja5g1600 894 Gene3D - 4 48 - -
Lja5g1600 894 SUPERFAMILY Homeodomain-like 25 96 IPR009057 -
Lja5g1600 894 Gene3D - 49 104 - -
Lja5g1600 894 MobiDBLite consensus disorder prediction 104 138 - -
Lja5g1600 894 MobiDBLite consensus disorder prediction 370 417 - -
Lja5g1600 894 Coils Coil 721 782 - -
Lja5g1600 894 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 97 IPR017930 -
Lja5g1600 894 MobiDBLite consensus disorder prediction 829 849 - -
Lja5g1600 894 MobiDBLite consensus disorder prediction 771 790 - -
Lja5g1600 894 CDD SANT 10 45 IPR001005 -
Lja5g1600 894 Pfam Myb-like DNA-binding domain 52 103 - -
Lja5g1600 894 Pfam pre-mRNA splicing factor component 369 607 IPR021786 -
Lja5g1600 894 MobiDBLite consensus disorder prediction 817 875 - -
Lja5g1600 894 CDD SANT_CDC5_II 47 96 - -
Lja5g1600 894 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 378 - -
Lja5g1600 894 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 376 801 - -
Lja5g1600 894 SMART sant 48 95 IPR001005 -
Lja5g1600 894 SMART sant 6 47 IPR001005 -
Lja5g1600 894 ProSiteProfiles Myb-like domain profile. 2 45 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1600 Lja-Chr5 17191098 17196643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1600 1 785 MYB-Related Transcription Factor Family AT1G09770 68.541 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja5g1600 Myb_Cef 1e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1600 K12860 - gmx:100790369 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1600 5 17191098 17196643 Lja5g1600 5 17191098 17196643 ECH