Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1599 ATGGTGAGGACTCCTTGTTGTGAGAAGATGGGATTGAAGAAGGGGCCTTGGACACAAGAAGAAGATCAGATTTTGATTTCTCATATTCAACAACATGGCCATGGAAACTGGCGTGCACTTCCAAAACAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTAGGCTTCGTTGGATAAATTACTTAAGACCGGATATTAAAAGAGGGAAATTCAGCAATGAAGAAGTAGAGACAATCCTTAAACTGCATGGAATTCTTGGAAACAGATGGTCTACTATTGCTGCAAGATTGCCTGGAAGAACTGATAATGAAATAAAGAATTTTTGGCACACTCATTTGAAGAGGAATGAGAGAAGTACTACTATCAATAATACCTCCACTTATCCCTTGCAAGAGGCAGAAGCAGATTCTGGTTCAGGGGCTTTATTAGATATGCCACAGGAAGCTACTTCTAGTTCTAGTGTTACTGGGACATTGTTGATTGCAAATGATGGTTCATCTTCATGGAGAAACTCACCTGCTAAAGGTCTAGGATTTCATGGTAATGGTACAGTCTCTTCTGATATTTCAGGAAAAACAATGGGCAGTAATGCTCATAGTGAGATTGGTGAAGAAATGGAATTTTGGTGTAATCTATTCACCAGCAGTCATCACGACAAGGGCATGGAAATATAA 672 0.3973 MVRTPCCEKMGLKKGPWTQEEDQILISHIQQHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSNEEVETILKLHGILGNRWSTIAARLPGRTDNEIKNFWHTHLKRNERSTTINNTSTYPLQEAEADSGSGALLDMPQEATSSSSVTGTLLIANDGSSSWRNSPAKGLGFHGNGTVSSDISGKTMGSNAHSEIGEEMEFWCNLFTSSHHDKGMEI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1599 223 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja5g1599 223 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja5g1599 223 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja5g1599 223 CDD SANT 69 112 IPR001005 -
Lja5g1599 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja5g1599 223 CDD SANT 16 61 IPR001005 -
Lja5g1599 223 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja5g1599 223 Gene3D - 69 115 - -
Lja5g1599 223 Gene3D - 13 66 - -
Lja5g1599 223 PANTHER MYB TRANSCRIPTION FACTOR 1 217 - -
Lja5g1599 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja5g1599 223 SMART sant 13 63 IPR001005 -
Lja5g1599 223 SMART sant 66 114 IPR001005 -
Lja5g1599 223 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Lja5g1599 223 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1599 Lja-Chr5 17188199 17189514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1599 1 215 MYB Transcription Factor Family AT2G31180 48.117 6.02e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g1599 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1599 K09422 - gmx:100797027 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1599 5 17188199 17189514 Lja5g1599 5 17188199 17189514 ECH