Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1592 ATGTCTTCGTCTTTTCCTGTCTTTCGGTCTTCCTCGGCGCAGGCTGCATCGATCAATTCCAACGTCAGGGGTGCTGGGCACATGTTTTCAGCCCCGGCTGAGTTCCCTGATGACATCCCTTTTTCGGCGGTTTCAGAATTACATTCGTCTTCAGCATTCGTTGCTCACCCTGGTGATGTTTCATGGGGACCGGATCCGTTTCAGGATATTCTTCAGTTTTCTGATGATGTTTCCATCCAGAATGATCTCATGGAATATAGTGCTCCCTACGTGTCCGGTGACAATGCGAAAGCAGCTGATATCGGGGAGTGGGTTGAACAGTTGATGTCAGCTGATGAGCCTCCTCATCCAACTTGGAATCAAATTCTCGGCGATGATAACGTAACAGAACCAAGTTCAAAGGAGGCCCAGGTTTCACAGCAACAGCATGTGCCATCTAGAGAAGCAAATGATCTTCCTAATTCTGCGTCGAATGCACCACAAACTAAGCCTCGAATGCGTTGGACCCCAGAACTGCACGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGGGGCAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCACTTACAAAAGTATAGAACTGCTAGGTACAAACCTGAGTCATCAGAAGATACAGGAACTCCTGAACACAAGTTGACTTCAATAGAAGAAATGAAGTCTCTTGACTTAAAAACGAGTAAGGGTATTACTGAAGCACTGCGGCTGCAGATGGAACTACAGAAGCGGCTTCATGAACAACTAGAGGATCAAAGAAAATTGCAGATTCAAATTGAAAACCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAACAGATCAAATCGGATGAGCCTTCTGCTTCACTATCAAAGGCAGTGTTACCTTCTCCAGCTGACAATTTAGAAACCTCAAATGAGGGTCATGAAAAAGCTGGAATCAGCAGTAGCACACCGGAAAACTTACCCGAAGAAAGTTCCCAAGATAGAGGTGATGCTAAAGTTACTGATGAACATGAGCTGGTAGATGACCAATTTTCTACACCACCAACAAAACGGGTAAAGACTCTGTAG 1116 0.4561 MSSSFPVFRSSSAQAASINSNVRGAGHMFSAPAEFPDDIPFSAVSELHSSSAFVAHPGDVSWGPDPFQDILQFSDDVSIQNDLMEYSAPYVSGDNAKAADIGEWVEQLMSADEPPHPTWNQILGDDNVTEPSSKEAQVSQQQHVPSREANDLPNSASNAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEDTGTPEHKLTSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEDQRKLQIQIENQGKRLQMMFEKQIKSDEPSASLSKAVLPSPADNLETSNEGHEKAGISSSTPENLPEESSQDRGDAKVTDEHELVDDQFSTPPTKRVKTL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1592 371 Gene3D - 162 221 - -
Lja5g1592 371 MobiDBLite consensus disorder prediction 295 371 - -
Lja5g1592 371 MobiDBLite consensus disorder prediction 122 164 - -
Lja5g1592 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 220 IPR017930 -
Lja5g1592 371 MobiDBLite consensus disorder prediction 111 164 - -
Lja5g1592 371 Pfam Myb-like DNA-binding domain 165 216 IPR001005 -
Lja5g1592 371 MobiDBLite consensus disorder prediction 339 360 - -
Lja5g1592 371 Coils Coil 253 273 - -
Lja5g1592 371 Pfam MYB-CC type transfactor, LHEQLE motif 252 296 IPR025756 -
Lja5g1592 371 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 9 370 - -
Lja5g1592 371 MobiDBLite consensus disorder prediction 312 338 - -
Lja5g1592 371 SUPERFAMILY Homeodomain-like 161 217 IPR009057 -
Lja5g1592 371 MobiDBLite consensus disorder prediction 217 236 - -
Lja5g1592 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 370 IPR044848 GO:0003700
Lja5g1592 371 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 163 217 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1592 Lja-Chr5 16997732 17001349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1592 20 334 G2-like Transcription Factor Family AT4G28610 45.000 1.33e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja5g1592 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1592 - - mtr:MTR_1g080330 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0169 1 1458037 1462709 Lja5g1592 5 16997732 17001349 ECH
Lja5g1592 5 16997732 17001349 Lja5g1592 5 16997732 17001349 ECH
Lja1g0998 1 9922014 9928428 Lja5g1592 5 16997732 17001349 PCT
Lja1g0169 1 1458037 1462709 Lja5g1592 5 16997732 17001349 PCT