Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1584 ATGGAGGGAAAAGCTGATGATGAGGTGGTGGTGGATATTGAGAGTGCTTCTAGCGGTTCTTTCAATGATGATTCTGACGATGAGGGATCTTTGCCTTCTGAAATTGATGACAAAGTGATTGAGGAACCTCTCACTGAGCAGGAGATAGAAGACCTCGTTTCTGAATTATTAGAAGTGGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCTAAAGTGGAGAGTGAAGTTAGACAAGAACTGAAGCAAACTCTTCAGGGGGATGATCTGGAAACTGCTGTTGCTGATGAGATGACTACTTTCAAAGAAGATTGGGAAGCTGTTCTGGATGAACTTGAAACCGAAGCTGCGCACTTACTGGAACAACTTGATGGGGCTGGAATTGAACTCCCAAGCCTATATAAGTTGATTGAAAAAGAAGCTCCCAATGTTAGCTGCACCGAAGCATGGAAAAGGAGAAATCATTGGGTCGGGTCTGAGACAACTGCTGAAATTTCAAAGTCTATTGGTGATGCTGAGCAATATCTAAAGGGAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTAGAAGAGGGTGCTAGTGGTTTTCTCCAAAAAAAAATTTGCGCTGAAGCCCAGGAGCCTGTAAAGAAAGAAGGCGAGGTGGATTGGGATCTTTTCAATAAAATAATTTCTGATGAGAGCGGTGGTGATGCTTCATTTGGCAGTAGGCAGTGGGCTTCTGTTTATTTGGCTAGCACTCCACAGCAAGCTTCCCTGATGGGACTCAAATTCCCTGGAGTTGATGAGGTGGAGGAAATTGATGATGTTGATGGCAATTCTACTGATCCATTTGTTGCAGCTGCAATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGGCAATTTAAGAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGAAAGCTTCAAATCCGTTTGAAACATAGGAGGCATCAAAAGAAAAGTAAACAGCGTGAAAGGAGCACACATACCGTGTCAATGGAGAGCCAAATACTGAAGCCTTGCTCTGTTGATGAATTTAGCCCTGTTATGAAAGACGGAACTAGTGATTATGGAGAACTTGTGTCTGACAATGACAAGGTCGCTTGTTTGAATATGGAGACCGATACAATTGGCGGTTTTGATGCCAGTTTTCATCTTGACAAAGAAGAGCCTATGAGTACTTGCAATTTGTCAGATCCACCCAAATCCTCATTGGGTGATGTTATTGAACAGAGAGGAACTAAGCGTCTAAATGATGGTGAACTTGATGCTGATAATAAAAAGCGTCACACTGGTATTACTGACAGTGATGATGAAGCAGATGCCACTGAAGATAAGCTTGATTGCAGTACACTAGATGATCAATCGAAGATAAAAGGTTTATCTGGTGTAGTAGTTTCTAGTTCTGGTAGTGATTCAGAATCAGATAATTCAGATGAGTCAGATGATTCAGATGATTCAGATGCAAAGATAAATGTTACTATCAGTTCTAAACGGAGGCACAAAAAGAAGATTAGGAGGATACTTGACGATGCCGAATTAGGAGAGGAGACGAAAAAGAAAATAGCAATTGAGAAGGAACGTCAGGAACGACTGAAGTCTTTGCGAGGACAGTTTTCTGTCTCATCAATTGAGATGAACTCTGGTGGGTGTAATGGGAATTTAACTGAAGGTGCAAGCCTCGAAATTCTCGGTGATGCACAAGCAGGTTACATAGTGAATGTTGTGAGGGAAATAGGTGAAGAAGCTGTCAGAATTCCAGCTAGTATCTCAGCTAAACTAAAGGCCCATCAGGTTACTGGAATACGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGGTGTATTCTAGCTCATACTATGGGACTTGGTAAAACTTTTCAGGTGATAGCTTTCTTATACACTGCGATGAGAAGTGTTGATTTGGGGTTAAGAACTGCACTTATAGTCACACCTGTCAATGTGCTCCATAATTGGCGGCGGGAGTTCATCAAATGGGCACCATCAGAATTAACACCTCTCAGGATCTTTATGCTGGAAGATGTACCAAGAGATAGGAGGGCACATTTACTTGCAAAGTGGAGAGCTAAAGGAGGTGTGTTTTTGATAGGCTATTCTGCTTTCCGAAATTTGTCTTTTGGAAAGAATGTGAAAGATCGGCACATGGCCAGAGAAACTTGCCGGGCTTTGCAGGACGGGCCTGATATTCTTGTCTGTGATGAGGCCCATATGATAAAAAATACCAAGGCTGACGTAACTCAAGCTTTGAAGCAAGTAAAATGCCAGAGAAGAATTGCGCTTACTGGATCACCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGATTTCTTGGAAGCAGTCATGAATTTAGGAACCGCTTCCAAAACCCTATAGAGAATGGTCAGCACACTAACTCAACTCAGACTGATGTAAAAATTATGAACCAAAGGTCTCATATCCTTTATGAAGAGTTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTGAAAAAGGATCTACCGCCCAAAACTGTCTTTGTTATAACAGTCAAGCTTTCTCCCCTACAAAGGAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTAATGTCAGGGCGCATCATGAACAGTTAAGAAAAAGAAGTTTCTTTGCTGGTTACCAGGCACTGGCTCGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGAGAAGGAGCGTGTAAGACATGAAGATGCTGTTGAGAATTTTCTTGTTGATGATAGCTCTAGTGATGAAAATTCTGATTCTAATGTGCTTGCTGGAGAGAAGATGAAGGAGACAAATCAATTCATGCCAAGGAAGGATGGTGATGGCTTTTTCGTAAAGGGATGGTGGAATGATCTTCTTCATGGAAAAATTTATAAAGAGCTTGATCAAAGTGGCAAAATGGTTTTGCTGATAGATATACTAACCATGAGTTCTGATGTGGGCGATAAGGTATTGGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATAGAACTTTATCTCTCAAGGATACCACGACGTGGCAAACAAGGGAAGCTTTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCAGAAAGGCAGAAGCTTGTTGAAAAATTTAATGAACCCTTAAATAGGAGGGTTAAATGCACGCTGATTTCAACAAGAGCAGGTTCTTTGGGTATTAATCTCCATGCAGCTAACCGTGTCGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTGCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAAAAAGCCAGTGTTTGCTTATCGACTTCTGGCTCATGGAACTATGGAAGAGAAAATATATAAACGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTTCATAGGACCATATCTAAAGAAGAAATGTTGCATCTCTTCGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTTGATCAAGAAAATGGGCATACTTGTGATCAAATTAACCCAATTTTGGCTGGGCATTCACTGAAACAAACAGTGCCACATTCAAATGGAAGCAGTTCTTCTGATAAGTTAATGGAAAGCTTACTTAGCCAGCATCATCCACGGTGGATTGCCAATTATCATGAACATGAAACCTTGTTACAAGAAAATGAAGAGGAAAAGCTGTCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGTAAATCAATGGAGTGGGAAGAAGTGCAAAGAGTACCGCTCGATGAGTCTATGCCTGATCAAAAGCCAGAAGTGGCGGTGGCAAAGCCGCATGTATCAGAGACCCGCATCCTCTCACCAAGACTAGCCAGACGTTTCTCAACGCGGAAATGCACCAACCTTGCGCATTTGTTGACACTTCGAAGTCAAGGAGTAAAATTTGGTAAAAGTACAGTTTGTGGGGAATGTGCACATGAGATAAGGTGGGAAGATTTGAAGAAGAGTTAG 4110 0.4182 MEGKADDEVVVDIESASSGSFNDDSDDEGSLPSEIDDKVIEEPLTEQEIEDLVSELLEVESKAAEAQEALEEESLAKVESEVRQELKQTLQGDDLETAVADEMTTFKEDWEAVLDELETEAAHLLEQLDGAGIELPSLYKLIEKEAPNVSCTEAWKRRNHWVGSETTAEISKSIGDAEQYLKGNRPVRRRHGKLLEEGASGFLQKKICAEAQEPVKKEGEVDWDLFNKIISDESGGDASFGSRQWASVYLASTPQQASLMGLKFPGVDEVEEIDDVDGNSTDPFVAAAIANERELDLSDEQRRQFKKVKEEDDAIVDRKLQIRLKHRRHQKKSKQRERSTHTVSMESQILKPCSVDEFSPVMKDGTSDYGELVSDNDKVACLNMETDTIGGFDASFHLDKEEPMSTCNLSDPPKSSLGDVIEQRGTKRLNDGELDADNKKRHTGITDSDDEADATEDKLDCSTLDDQSKIKGLSGVVVSSSGSDSESDNSDESDDSDDSDAKINVTISSKRRHKKKIRRILDDAELGEETKKKIAIEKERQERLKSLRGQFSVSSIEMNSGGCNGNLTEGASLEILGDAQAGYIVNVVREIGEEAVRIPASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTQTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNVRAHHEQLRKRSFFAGYQALARIWNHPGILQLTKEEKERVRHEDAVENFLVDDSSSDENSDSNVLAGEKMKETNQFMPRKDGDGFFVKGWWNDLLHGKIYKELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKQGKLWKKGKDWYRLDGRTESSERQKLVEKFNEPLNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELDQENGHTCDQINPILAGHSLKQTVPHSNGSSSSDKLMESLLSQHHPRWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKSMEWEEVQRVPLDESMPDQKPEVAVAKPHVSETRILSPRLARRFSTRKCTNLAHLLTLRSQGVKFGKSTVCGECAHEIRWEDLKKS* 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1584 1369 Gene3D - 579 860 IPR038718 -
Lja5g1584 1369 SMART helicmild6 1038 1135 IPR001650 -
Lja5g1584 1369 MobiDBLite consensus disorder prediction 326 345 - -
Lja5g1584 1369 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 811 IPR014001 -
Lja5g1584 1369 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1015 1183 IPR001650 -
Lja5g1584 1369 MobiDBLite consensus disorder prediction 472 507 - -
Lja5g1584 1369 Pfam SNF2-related domain 628 930 IPR000330 GO:0005524|GO:0140658
Lja5g1584 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 860 IPR027417 -
Lja5g1584 1369 SMART ultradead3 602 823 IPR014001 -
Lja5g1584 1369 Coils Coil 107 134 - -
Lja5g1584 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 866 1204 IPR027417 -
Lja5g1584 1369 Coils Coil 1254 1274 - -
Lja5g1584 1369 MobiDBLite consensus disorder prediction 1 36 - -
Lja5g1584 1369 Pfam Helicase conserved C-terminal domain 1011 1135 IPR001650 -
Lja5g1584 1369 CDD SF2_C_SNF 1003 1146 - -
Lja5g1584 1369 PANTHER RAD54-LIKE 30 1367 - -
Lja5g1584 1369 MobiDBLite consensus disorder prediction 472 486 - -
Lja5g1584 1369 MobiDBLite consensus disorder prediction 426 449 - -
Lja5g1584 1369 Gene3D - 871 1224 IPR027417 -
Lja5g1584 1369 PANTHER RAD54-LIKE 30 1367 IPR044574 GO:0016887
Lja5g1584 1369 Coils Coil 49 76 - -
Lja5g1584 1369 MobiDBLite consensus disorder prediction 426 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1584 Lja-Chr5 16920326 16944810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1584 636 1188 RAD5 or RAD16-like Gene Family AT5G43530 24.057 3.64e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja5g1584 SNF2_N 8.6e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1584 K10779 - sind:105161157 1615.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1584 5 16920326 16944810 Lja5g1584 5 16920326 16944810 ECH