LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g1582	ATGCAAACCCACTTGATGTTCTTCTACTTTTACATTGGCCTCTCTCTTGTTTTTGCTGAGGGGGGTCAAGCTGCAGCAGATGATGAATTCTCAACTCTTCTCTCAATCAAATCAAGTTTCATTGATCCAATGAACTATCTGAAGGATTGGCATCTACCAACCAATGTGACACAGCAAAGTTGGCAGCACCATTGTAACTGGACTGGAGTTGGTTGCAACTCTAGAGGTTTTGTAGAGACTCTTGACCTCTACAACATGAACCTCAGTGGTCATGTTTCAGATCACATCCAATCCCTTTCAAGTCTATCTTTTTTCAACATAAGCTGCAACAACTTTGATTCAGCACTTCCCAAATCACTGTCCAACTTCACCTCTCTGAAGAGCTTTGATGTGAGCCAGAACTACTTCAAGGGCAGCTTTCCGACGGGCCTCGGAAGAGCTTCAGGGTTGAGATCAATCAATGCTTCAAGCAATGATTTTTCAGGTTTTCTTCCTGAGGATATTGGAAATGCAAGTTTCCTTGAGAGCCTTGATTTTCGCGGTGGCTACATTGAAAGTCCAATCCCAAGAAGTTTTAAGAATTTGCAGAAACTAAAATTTCTAGGCCTTTCAGGGAATAACTTCACTGGGAGGATTCCAGGGTATCTTGGTGAACTCAGTTCTCTGGAGACATTGATTCTGGGATACAATGAGTTTGAAGGTGAGATCCCTTCAGAGTTTGGCAACTTGACCAATCTTCAATATCTTGACTTGGCTGTTGGAAGTCTCAGTGGTCAAATTCCACATGAGTTAGGTAAGCTGAGAAATCTCACTACAATGTACTTATACCAAAACAGCTTCACAGGAAAAATTCCACCTCAACTTGGCAACATTGTGTCACTTGTATCTCTGGACCTCTCTGACAATCAAATCGGCGGAGAGATTCCAGAAGAACTTGCTAATTTGGAAAACCTGCAGCTGTTGAATTTGATGAGCAACAAATTAACTGGTAATGTACCAGAGAAGCTTGGTGAATTGAGAAATTTGCAGGTGCTTGAGCTGTGGAAAAATTCTTTACAAGGTCCTTTGCCACTAAGTCTTGGAAAAAATTCTCCTTTGCAGTGGTTAGATGTGTCCTCTAACTCATTATCTGGTGAGATCCCTCCAGGTTTGTGTGCTACAGGAAATCTCACTAAACTAATCCTCTTCAACAACTCCTTCTCTGGTTCCATCCCTAGTGGACTTTCAAACTGTTCGTCCTTGGTTCGTGTTCGGATTCAGAACAATCTTTTTTCTGGAAGTATTCCAGTTGGCTTTGGAAGCCTCCCTGGCCTTCAGAGGCTGGAGGTTGCAAAGAACAACTTATCAGGGCAAATTCCTATAGACATTACCTCATCCACATCACTTTCTTTCATTGATGTATCTTGGAACCACCTTGAGTCTTCTCTACCTTCAGAAATTCTTTCTGTTCCAACCCTTCAAACCTTCATTGCCTCTCACAACAACTTTGGAGGAACTATCCCAGATGAGTTCCAGGACTGTCCATCTCTCTCTGTGCTTGATCTTTCAAGCACAAACATCACTGGCACAATCCCAGAAAGCATTGCCTCTTGTCAAAAGTTAGTCAACCTTAACCTCAGAAACAACAGTTTAACAGGTGAAATCCCAAAATCAATCACCAAAATGCCCACCTTATCTGTTCTTGATCTATCCAACAATTCACTCACTGGTAACATACCTGAAAGCTTTTCCCCAGCTCTGGAAATGCTGAACCTTTCCTATAACAAACTTGAGGGGCCAGTGCCCTCAAATGGGATCATGATGACAATAAATCCTAATGACCTTACCGGCAATGCGGGTCTCTGTGGAGGCTTTCTCCCTCCGTGCTCCCAGAGTTTGACTGTGACAAGCCGGCGAAAGAGCTCGCACACAAGACACATCGTCATTGGTTTTGTAGCTGGCATTTCAGTTATTCTATCTCTTAGTGCAGCATATTTTGGTGGTAAATGGGTATACAAGAGATGGGATCTGTACAACAATTTCATCCATGACTGGTTCAAGCAGAGCAGTGTGGATTGGCCTTGGAGGTTAGTAGCATTCCAAAGGATCGGTTTCACTAGCAGTGACATCCTAGCTTGCATAAAGGAATCAAATGTCATAGGCATGGGGGGCACTGGTATTGTTTACAAAGCTGAAATCCATAGACCTCATGTAATTGTAGCAGTGAAAAAACTATGGAGGTCACAACAAACAGACATAGAAGATGGCAATGATGTACTAAGAGAAGTCGAACTCCTTGGGAGACTTAGGCATAGGAATATTGTGAGGATGTTGGGGTATGTGCACAATGAAAGGGAGGTGATGATGGTTTGCGAGTACATGCCTAATGGGAACCTTGGAACTGCACTGCATGGTGAACAATCTGCAAGGTTGCTTGTGGATTGGGTCTCAAGGTACAATATAGCTCTTGGAGTTGCACAAGGGCTGAACTACCTCCACCATGATTGTCACCCTCCAGTTATTCACAGGGATATCAAGTCTAACAACATACTTCTCGACGCGAATTTGGAGGCAAGGATAGCTGATTTCGGGTTGGCCAGGATGATGATGCAAAAGAATGAGACAGTTACCATGGTGGCTGGATCTTATGGATATATTGCCCCAGAATATGGATATACGTTGAAGGTTGATGAGAAGATTGACATATACAGCTATGGGGTGGTACTTTTGGAGCTTTTAACTGGCAAAAGGCCTTTAGACCCTGCATTTGAAGAATCTGTAGACATAGTCGAATGGATTCAAAAGAAGAGAAAGAACAAAGCCTTGATAGAGGTACTAGACCTCTCCATAGCAGGTCAGTGCAAACATGTCCAAGAAGAGATGCTTCTTGTACTCCGGATTGCACTTCTATGCACTGCAAAGCTTCCCAAGGAAAGACCATCCATGAGAGACATCATCACAATGCTTGGAGAGGCAAAACCGAGAAGGAAAAGTGTTTGCAATGGGGGACAAAATAGTAGTATGGAAAAGCCAACAATCATTAATACCTCTCCAGTAGTGAGTCTCTTGTAG	3051	0.4304	MQTHLMFFYFYIGLSLVFAEGGQAAADDEFSTLLSIKSSFIDPMNYLKDWHLPTNVTQQSWQHHCNWTGVGCNSRGFVETLDLYNMNLSGHVSDHIQSLSSLSFFNISCNNFDSALPKSLSNFTSLKSFDVSQNYFKGSFPTGLGRASGLRSINASSNDFSGFLPEDIGNASFLESLDFRGGYIESPIPRSFKNLQKLKFLGLSGNNFTGRIPGYLGELSSLETLILGYNEFEGEIPSEFGNLTNLQYLDLAVGSLSGQIPHELGKLRNLTTMYLYQNSFTGKIPPQLGNIVSLVSLDLSDNQIGGEIPEELANLENLQLLNLMSNKLTGNVPEKLGELRNLQVLELWKNSLQGPLPLSLGKNSPLQWLDVSSNSLSGEIPPGLCATGNLTKLILFNNSFSGSIPSGLSNCSSLVRVRIQNNLFSGSIPVGFGSLPGLQRLEVAKNNLSGQIPIDITSSTSLSFIDVSWNHLESSLPSEILSVPTLQTFIASHNNFGGTIPDEFQDCPSLSVLDLSSTNITGTIPESIASCQKLVNLNLRNNSLTGEIPKSITKMPTLSVLDLSNNSLTGNIPESFSPALEMLNLSYNKLEGPVPSNGIMMTINPNDLTGNAGLCGGFLPPCSQSLTVTSRRKSSHTRHIVIGFVAGISVILSLSAAYFGGKWVYKRWDLYNNFIHDWFKQSSVDWPWRLVAFQRIGFTSSDILACIKESNVIGMGGTGIVYKAEIHRPHVIVAVKKLWRSQQTDIEDGNDVLREVELLGRLRHRNIVRMLGYVHNEREVMMVCEYMPNGNLGTALHGEQSARLLVDWVSRYNIALGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMMQKNETVTMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKRPLDPAFEESVDIVEWIQKKRKNKALIEVLDLSIAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDIITMLGEAKPRRKSVCNGGQNSSMEKPTIINTSPVVSLL*	1017

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g1582	1016	Gene3D	Ribonuclease Inhibitor	28	185	IPR032675	-
	Lja5g1582	1016	Gene3D	Ribonuclease Inhibitor	186	286	IPR032675	-
	Lja5g1582	1016	Gene3D	Ribonuclease Inhibitor	366	626	IPR032675	-
	Lja5g1582	1016	Gene3D	Phosphorylase Kinase; domain 1	707	790	-	-
	Lja5g1582	1016	Pfam	Leucine rich repeat	533	590	IPR001611	GO:0005515
	Lja5g1582	1016	Pfam	Leucine rich repeat N-terminal domain	26	73	IPR013210	-
	Lja5g1582	1016	ProSiteProfiles	Protein kinase domain profile.	707	989	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g1582	1016	SUPERFAMILY	Protein kinase-like (PK-like)	703	982	IPR011009	-
	Lja5g1582	1016	Gene3D	Transferase(Phosphotransferase) domain 1	791	1003	-	-
	Lja5g1582	1016	Gene3D	Ribonuclease Inhibitor	287	365	IPR032675	-
	Lja5g1582	1016	SUPERFAMILY	RNI-like	256	597	-	-
	Lja5g1582	1016	Pfam	Protein kinase domain	709	979	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g1582	1016	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	833	845	IPR008271	GO:0004672\|GO:0006468
	Lja5g1582	1016	SUPERFAMILY	L domain-like	60	330	-	-
	Lja5g1582	1016	PANTHER	UNNAMED PRODUCT	7	999	-	-
	Lja5g1582	1016	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1	7	999	-	-
	Lja5g1582	1016	SMART	serkin_6	707	982	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g1582	1016	ProSitePatterns	Protein kinases ATP-binding region signature.	713	737	IPR017441	GO:0005524
	Lja5g1582	1016	Pfam	Leucine Rich repeat	293	308	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g1582	Lja-Chr5	16893203	16896427	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g1582	4	1016	Receptor kinase-like Gene Family	AT1G08590	64.500	0.0	1301

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Lja5g1582		Pkinase	2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g1582	-		-	gmx:100793873	1699.87