Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1578 ATGGTACGTTCGCTAATTTCTTTTCTGCATTTTGGTTTCGCCTATTTTCAATTATTGAATATTAATGTGGGTTCGCATGTCTGGGCCGAAGACCCTGAGGTATGTTGGATCGATGGACAGGTGTCAAAAATCAATGGAAATGATGCTGAAATTGAAACTACCGATGGAAAAAAGGTTGTCGCAAATTTATCAAAAATATATCCTAAGGATATGGAAGCTCCTCCTGGCGGAGTGGATGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTCCTGCAGAACTTAAGAATTAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGGCTCCCTCATATTTATGGTGCACACATGATGCAACAATACAAGGGAGCACCATTTGGAGAATTAAACCCCCATGTATTTGCAATTGCTGATGTTGCATTTAGGGCAATGGTTAATGAAGGAAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAGATGCTTATGCAATACCTTGCTTTCCTTGGTGGTAGGGCTGGTACTGAAGGTCGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCTAGTCGTTTCGGTAAATTCGTTGAGATCCAATTTGATAAGAGTGGAAGGATCTCAGGAGCAGCTATCCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAGTTAACGATCCTGAACGGAACTACCATTGCTTTTATCTCCTTTGTGCTGCACCACAGGAGGAAGTTGAGAAATATAAATTAGGAAATCCTAGAACATTTCACTACCTTAACCAGTCAAAATGCTTTGAACTGGCTGATGTGAGCGATGCTCGTGAGTATCTTGCTACTCGGAGAGCTATGGATATTGTTGGAATCAGTCAAACTCATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATCTTGGTAATATTGAGTTTACCAAAGGAAAAGAAGTTGACTCATCCATTCCAAAAGATGACAAAGCCAAATTCCACCTGAAAACTACTGCTGAGCTTCTCATGTGTGATGTTGTTGCCTTGGAAGATGCATTATGTAAGCGTGTCATGGTCACCCCTGAAGAAGTTATAAAAAGGAGCCTTGACCCACAAAGTGCAGCGATCAGCAGAGATGGATTGGCAAAAACAATTTATTCTCGGCTATTCGACTGGTTGGTGGACACGCTTAATAATTCAATCGGACAAGACCCGAATTCTAAATATTTGATTGGGGTTCTTGATATCTACGGTTTTGAAAGCTTTAAAACTAACAGTTTTGAGCAGTTTTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGCAGATAGATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATCATTGCTCTCCTCGATGAAGCATGCATGTTTCCAAAGTCAACACATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACGGATTTCACCATTGCTCATTATGCTGGAGAGGTTGGATACCAGTCTGACCAATTTTTAGACAAAAACAAGGATTATGTAGTGCCTGAGCATCAAGATTTATTAAGTGCTTCCAAATGTTCTTTTGTATCTGGCCTTTTTCCACCACTTCCAGTAGAGACATCAAAATCTTCAAAATTTTCTTCAATTGGGTCTCGTTTTAAGCTACAACTACAGCAACTAATGGAGACATTAAATTCTACCGAACCCCATTACATTAGATGCGTGAAACCAAACAACATCCTCAAGCCTGCAGTTTTCGAGAATGTTAATGTTATGCAACAACTTCGTTGTGGTGGTGTTCTGGAAGCAATTAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTCCTTTCTTTGAATTTATAAACAGATTTGCCCTCCTTGCCCCAGAGGCCGCGGAAGCAAACTGTGATGAGAAGACCGGTTGCAAAAAGATTTTGGAAAAGATGGGACTTAAAGGATATCAGATTGGAAAAACAAAGGTATTCTTAAGAGCAGGTCAGATGGCTGAACTCGATGCACGGAGAGCTCAAGTACTTAGTAATGCAGCAAAAATTATCCAACGGCGCATACGAACCCATCAAGCTCGTAAACATTATCTTGCATTGCGAAAGAAGGCCATATATGTGCAGTCTCGGTGGAGAGGAAGACTTGCGTGCAAACTTTATGATAAATTGAGAAGGGAAGCTGCTGCTGTGAAAATTCAAAAGAACATTCGCAGACATGAATCTAGGAAAGCCTATAAAGAACTTCACATATCAGTACTTGTGCTGCAAACGGTTTTAAGGGCCACTGCTGCTCGCAAGGAGTTCAGATTTAGGAAACAGACTAAGGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCACAAAGCAACATTATATTTCAAGAGGCTCAAGAAAGGTACAATAGTTACACAAAGCAGATGGAGAGGGCGTTTATCCAGGAGAGAACTTAGAAAACTAAAAATGGCTGCAAGAGAAACTGGTGCACTTCAAGAAGCAAAGGATAAACTTGAAAAACGAGTGGAGGAACTCACTTGGCGTCTCCAACTAGAAAAAGGTTTAAGGACCAATCTGGAAGAATCCAAAGCACAGGAGATAGCAAAAATGCAAAATTCATTGCAGGCGATGCAGAGCAAAGTTGATGAAACTAATGCTCTGCTCATCAAGGAGAGAGAGAATGCAAAGAAAGCTATTGAAGAAGCACCTGCTGTCGTTAAAGAAACACAGGTTCTGGTTGAAGATACAGAGAAGATTGAGACACTCAAAATGGAAGTTGAGAGCCTAAAGAGTTCACTTGAATCGGAGAAACAGAAAGCTGATGACTTTGAAAGGAAATATAATGAAGCCCAAGTTTGTAGTGAAGAAAGAGGTAAAAAATTAGAAGAAACAGAGAAGAAGATTCGTCAGCTCCAAGAATCATTGGCCAGGCTTGAAGAGAAGATTAATAATGTAGAATCAGAGAATCAAGTTCTGCGTCAACAAGCTGTGTCCATGGCTCCGGTGTCCATGGCTCCTGTGTCTATGGCACCTAATAAGCTCCTTTCAGGACGCTCCTTCCGATCAAATATCCAGAGAGGTGCTGAAAGTGGTCATATTGCAGTGGAAACAAAGACATCTGTGGAACTGCATAGTCCATCAATGAACCAGAGAGAGTCCTCTGAAATAGAGGATAAACCACAAAGGTCACTAAATGAGAAGCAACAGGAGAATCAAGAGTTACTCATCAGATGTATTGCACAACATCTAGGCTTTTCTGGGAACAGACCGATTGCTGCCTGTATCATATATAAATGCCTTTTACATTGGAGATCATTTGAAGTTGAACGTACTAGTGTTTTTGATCGTATCATCCAAACCATTGGTCATGCAATTGAGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTGTCCAATGCCTCTACACTTCTCCTGTTACTCCAGCGCACACTCAAAGCAAGTGGTGCTGCTGGAATGGCTCCACAACGCCGTCGCTCTTCATCAGCAACCCTGTTTGGGAGAATGACTCAAAGTTTCCGTGGAACTCCAGCTGGGGTGAATCTTGCCCTAGTCAATGGCAGTTCAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCTTTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAGAAGATATATGGAATGATTCGTGATAACTTGAAGAAAGAAATATCTCCCTTGCTTGGATTATGCATCCAGGCGCCAAGAACATCCCGAGCAAGCTTGGTTAAGGGATCGCGTTCTGTTCCAAACACTGAAGCCCAGCGCGCTTTGATTGCTCACTGGCAGGGGATAGTGAAGAGCCTAGGCACCTTTTTAAATACGTTGAAAGCAAATAATGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACACAAATTTTTTCTTTTATCAATGTACAATTATTCAATAGTCTTCTTTTACGAAGGGAATGCTGCTCATTTAGTAATGGAGAGTATGTCAAAGCTGGTTTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACTGATGAGTATGCAGGTTCAGCCTGGGATGAGCTCAGACATATTAGACAAGCTATTGGATTTCTGGTCATACACCAGAAACCGAAGAAGACACTGGATGAAATAAGCCATGACCTGTGTCCAGTACTTAGTATACAGCAACTATATCGAATTGGCACCATGTACTGGGATGACAAATATGGAACGCATAGTGTGGCCCCTGATGTCATATCCAGTATGAGAGTATTGATGACTGAAGATTCAAATAATGCAGTTAGCAGTTCTTTCTTATTGGATGATGATTCAAGCATTCCGTTTTCTGTTGACGACATATCGAAGTCAATGGAACAGATAGATATCGCAGATATAGACCCCCCGCCACTGATTCGTGAAAACTCTGGCTTTAGCTTTTTGTTGCCACGCCCAGATTGA 4665 0.4101 MVRSLISFLHFGFAYFQLLNINVGSHVWAEDPEVCWIDGQVSKINGNDAEIETTDGKKVVANLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLRIRYELNEIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPFGELNPHVFAIADVAFRAMVNEGKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEVEKYKLGNPRTFHYLNQSKCFELADVSDAREYLATRRAMDIVGISQTHQEAIFRVVAAILHLGNIEFTKGKEVDSSIPKDDKAKFHLKTTAELLMCDVVALEDALCKRVMVTPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDTLNNSIGQDPNSKYLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVGYQSDQFLDKNKDYVVPEHQDLLSASKCSFVSGLFPPLPVETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNILKPAVFENVNVMQQLRCGGVLEAIRISCAGYPTRRPFFEFINRFALLAPEAAEANCDEKTGCKKILEKMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKIIQRRIRTHQARKHYLALRKKAIYVQSRWRGRLACKLYDKLRREAAAVKIQKNIRRHESRKAYKELHISVLVLQTVLRATAARKEFRFRKQTKASIIIQARWRCHKATLYFKRLKKGTIVTQSRWRGRLSRRELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKMQNSLQAMQSKVDETNALLIKERENAKKAIEEAPAVVKETQVLVEDTEKIETLKMEVESLKSSLESEKQKADDFERKYNEAQVCSEERGKKLEETEKKIRQLQESLARLEEKINNVESENQVLRQQAVSMAPVSMAPVSMAPNKLLSGRSFRSNIQRGAESGHIAVETKTSVELHSPSMNQRESSEIEDKPQRSLNEKQQENQELLIRCIAQHLGFSGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPAGVNLALVNGSSSRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSRSVPNTEAQRALIAHWQGIVKSLGTFLNTLKANNVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELRHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRIGTMYWDDKYGTHSVAPDVISSMRVLMTEDSNNAVSSSFLLDDDSSIPFSVDDISKSMEQIDIADIDPPPLIRENSGFSFLLPRPD* 1555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1578 1554 Gene3D Myosin VI head, motor domain, U50 subdomain 326 615 - -
Lja5g1578 1554 Gene3D Kinesin motor domain 79 676 IPR036961 -
Lja5g1578 1554 SMART DIL_2 1372 1479 IPR002710 -
Lja5g1578 1554 Coils Coil 937 971 - -
Lja5g1578 1554 CDD Prefoldin 931 1064 - -
Lja5g1578 1554 PRINTS Myosin heavy chain signature 443 471 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 PRINTS Myosin heavy chain signature 106 125 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 PRINTS Myosin heavy chain signature 163 188 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 PRINTS Myosin heavy chain signature 496 524 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 PRINTS Myosin heavy chain signature 210 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 ProSiteProfiles Dilute domain profile. 1185 1497 IPR002710 -
Lja5g1578 1554 ProSiteProfiles IQ motif profile. 797 824 IPR000048 GO:0005515
Lja5g1578 1554 ProSiteProfiles IQ motif profile. 749 775 IPR000048 GO:0005515
Lja5g1578 1554 Pfam Myosin head (motor domain) 78 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 PANTHER MYOSIN-9 21 1551 - -
Lja5g1578 1554 SMART iq_5 796 818 IPR000048 GO:0005515
Lja5g1578 1554 SMART iq_5 771 793 IPR000048 GO:0005515
Lja5g1578 1554 SMART iq_5 748 770 IPR000048 GO:0005515
Lja5g1578 1554 SMART iq_5 819 841 IPR000048 GO:0005515
Lja5g1578 1554 SMART iq_5 867 889 IPR000048 GO:0005515
Lja5g1578 1554 SMART iq_5 844 866 IPR000048 GO:0005515
Lja5g1578 1554 Coils Coil 982 1065 - -
Lja5g1578 1554 ProSiteProfiles IQ motif profile. 845 872 IPR000048 GO:0005515
Lja5g1578 1554 Gene3D - 748 798 - -
Lja5g1578 1554 Gene3D - 799 846 - -
Lja5g1578 1554 Gene3D - 847 896 - -
Lja5g1578 1554 MobiDBLite consensus disorder prediction 1121 1136 - -
Lja5g1578 1554 ProSiteProfiles IQ motif profile. 820 849 IPR000048 GO:0005515
Lja5g1578 1554 Pfam IQ calmodulin-binding motif 870 889 IPR000048 GO:0005515
Lja5g1578 1554 Pfam IQ calmodulin-binding motif 846 866 IPR000048 GO:0005515
Lja5g1578 1554 Pfam IQ calmodulin-binding motif 799 818 IPR000048 GO:0005515
Lja5g1578 1554 Pfam IQ calmodulin-binding motif 751 769 IPR000048 GO:0005515
Lja5g1578 1554 Gene3D - 453 637 - -
Lja5g1578 1554 PANTHER MYOSIN 21 1551 - -
Lja5g1578 1554 SMART MYSc_2a 71 747 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 Gene3D - 266 324 - -
Lja5g1578 1554 ProSiteProfiles IQ motif profile. 868 897 IPR000048 GO:0005515
Lja5g1578 1554 ProSiteProfiles Myosin motor domain profile. 76 746 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 Pfam DIL domain 1373 1476 IPR002710 -
Lja5g1578 1554 MobiDBLite consensus disorder prediction 1109 1137 - -
Lja5g1578 1554 Pfam Myosin N-terminal SH3-like domain 24 65 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 799 897 IPR027417 -
Lja5g1578 1554 Coils Coil 891 918 - -
Lja5g1578 1554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 799 IPR027417 -
Lja5g1578 1554 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 22 71 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja5g1578 1554 CDD MYSc_Myo11 90 734 IPR036018 -
Lja5g1578 1554 CDD MyosinXI_CBD 1136 1520 IPR037975 GO:0007015
Lja5g1578 1554 ProSiteProfiles IQ motif profile. 772 801 IPR000048 GO:0005515
Lja5g1578 1554 Gene3D - 681 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1578 Lja-Chr5 16787483 16801839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1578 19 1554 Myosins gene family AT1G54560 82.954 0.0 2671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1578 K10357 - gmx:100816792 2710.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1578 5 16787483 16801839 Lja5g1578 5 16787483 16801839 ECH