Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1570 ATGACCACCGCCACCAAGAAGGCCGCTCCGGCGAAGAAGCCGCTCTCCCACCCTCCCTTCGCCGAGATGATTACCGAAGCGATTGCGAGTTTGAAGGAGAGAACCGGTTCAAGCCAGCACGCGATTACCAAGTTCATCGAAGGGAAGCACAAGGAGCTTCCACCGACGTTCCGCAAACTCATCCTGCATCAGCTCAAGAAGTCGGTTGCCGCCGGGAAGCTTGTTAAGGTGAAGAACTCCTTCAAGCTAGCACCGTCTCGACCTGCTCCGGCGAAAGCAGCTCCCGCCGCCGCTGCACCTGCAGCCAAGAAGCCCAAAGCTGCTGCTGCTGCTGCTGCTGCCAAGCCGAAGCCGAAGGCTAAGACAACAACTGCCAAGGCTGTTGCAAAGCCGAAGGCAAAAGCTGCTGCTGCTGTTGTGAAGAAGGCCTCTGCCGTGAAACCTAAGGCGGCGGCGGCTAAGCCGAAAGCGAAGGCTGCTGCGGTGGTGAAGGCTGTGAAGAAGGTTGCTGCGAAGCCGGCAAGGAAGGCGCCGGTGAAGGCAGTGAAGAAGCCTAAGAGCGTGAAAACGCCGGTGAAGAAAGCGAAGAAGTAG 594 0.5842 MTTATKKAAPAKKPLSHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKNSFKLAPSRPAPAKAAPAAAAPAAKKPKAAAAAAAAKPKPKAKTTTAKAVAKPKAKAAAAVVKKASAVKPKAAAAKPKAKAAAVVKAVKKVAAKPARKAPVKAVKKPKSVKTPVKKAKK* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1570 197 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 5 138 - -
Lja5g1570 197 SMART h15plus2 14 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1570 197 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 137 196 - -
Lja5g1570 197 SUPERFAMILY "Winged helix" DNA-binding domain 13 94 IPR036390 -
Lja5g1570 197 MobiDBLite consensus disorder prediction 85 131 - -
Lja5g1570 197 Pfam linker histone H1 and H5 family 17 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1570 197 Gene3D - 12 88 IPR036388 -
Lja5g1570 197 PRINTS Histone H5 signature 30 47 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1570 197 PRINTS Histone H5 signature 3 24 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1570 197 PRINTS Histone H5 signature 171 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1570 197 PRINTS Histone H5 signature 111 125 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1570 197 PRINTS Histone H5 signature 149 166 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1570 197 CDD H15 16 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1570 197 PANTHER HISTONE H1 5 138 - -
Lja5g1570 197 PANTHER HISTONE H1 137 196 - -
Lja5g1570 197 MobiDBLite consensus disorder prediction 172 197 - -
Lja5g1570 197 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 16 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1570 Lja-Chr5 16652967 16653940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1570 18 83 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 7.01e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1570 K11275 - gmx:100810590 126.716