Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1569 ATGCATACATATTATTGCTGCTGTTGTCTCTTGCTGGTTTTCTGTTTTTTGAATGTGATTCCTGCATTGAGTGCTGCTAATGGCGGCGGCGAATCGTTGATCCTGGGTTGTGGATTGGAAGGTGGTGGCAAAGATGCTGATGGAAGACAATGGATTTCTGATAACAAGTACCTCTCAGGAGGAGGAGATTCAGTAACATCCAAAGCCTCTTTCCAAGACCCTTCTCTTTTATCTGAAGTCCCTTACATGACAGCCAGAGTTTTCAAATCAGAAGCAACTTACAAATTCCCTGTTCTACCTGATAAGCGTTACTGGCTCAGGCTCCATTTTTACCCCTCTGTCTACGGCAGTTTCAACCCCACAGATTCATATTTCTCCGTCGCGGCGAATGGGGTTACTCTTTTATCCAATTTCAGTGCCTCAATCACATGTCAGGCACTCTCACAGGCCTACATTGATAGGGAATATTCCCTTGCTCCATTGAATTCAGACACTCTATCTGTTACCTTCAAGCCGCGAGACGGGGGTTTTGCTTTTGTTAATGGCATTCAATTGATCCAAATGCCTGAGTTGTTTGATTCGGCACCGTTGGTGGGTTATGATGATCAAACTGTGGATGCAAAAAGTATGCATTTTCAGACAATGTTCAGGTTAAATGTTGGTGGGCAATACATATCTCCAGGGCAAGACTCTGGCCTAAGCAGAATGTGGTATGATGACACCCCTTATCTCTATGGTGGAGCCACTGGTGTGACCAACCAAGCTACTAAAAATGACACAATTGACTACAAAACCATGCCAAAGTACATAGCTCCTTCCAGTGTTTACTCCACATCAAGATCCATGGGACCCAATAAGGATGTGAACATGGGGTACAATCTCACATGGATTTTCCAAGTGGATCCTAATTCAATGTACCTTACCAGGTTGCATTTCTGTGATTACTATTATTCCAAGTCTAATGAGATTGTGTTCAAAATCTTCATCAACAACCAGACTGCAGAGCCTGAAGCAGATGTGATTGGATGGACAGGAGGTAAAGGAGTTCCAGTTTATAAAGACTATGTGACATATGTTCCTGGTGGAACAGTTGGTGAGGAGCTTTGGATTGCATTGCATCCTGTACCTGATAGTAAGCCAGAATTCTTTGATGCACTCCTCAATGGGGTTGAGATTTTCAAACTCAATGACACTAATTTGTCTGGCCCCAATCCTCAGCCTTCTGACATGCTGGTTGAGTATGAGGCGAAGGCGAAAACATTCCAAACCAACAAAAATGGTCACAAGAACATTGTTATTGGTGGAGCTGCAGGAGGTGCTGCAGGTTTTGCTATATTGGCTGCAATAGGTGTTGCTGTTCATCTCCAAAAGAAGAAGAGAGCTCCTGGATCATACACCAACACATCTAGCTGGCTTCCTTTATACGGAAACTCGCAAACGACCGGTACCAAATCCTCAGGGTCAGGGAAGAGTGGCAGTGGCAACATATCAGCCATGGCTCAAGGACTGTGCCGGTTTTTCTCATTACAAGAGATGAAGCAAGCAACCAAGAATTTTGATGAGTCCAATGTGATTGGGGTTGGAGGCTTTGGAAAGGTGTACAAGGGTGTTATTGACAATGGGGTTAAAGTAGCTATCAAGAAAGCAAATCCGCAGTCAGATCAAGGAGTGAACGAGTTCCAGACAGAAATTGAGATGCTTTCTAAGCTTAGACACAAACACTTGGTGTCCTTGATTGGTTTCTGTGAGGAAGATGATGAAATGTGCTTGGTTTATGACTACATGGATCGCGGAACGTTAAGGGAACATATTTACAAGGGAAACAAGCCATTGGATGAGCTATCATGGAAGCAAAGGTTGGAGATTTGCATTGGAGCAGCAAGAGGGCTTCACTACCTTCACACAGGAGCCAAGTACACCATCATTCATAGAGATGTGAAAACAACCAACATTCTCCTTGATGAAAACTGGGTTGCTAAGGTTTCAGATTTCGGGTTGTCAAAAACCGGTCCAAACATGAACCAAGGTCATGTTAGCACTGTGGTGAAAGGAAGCTTTGGGTACTTGGATCCTGAATATTTCAGAAGGCAACAATTAACTGAAAAATCTGATGTTTACTCATTTGGGGTTGTTCTGTTTGAGGTTCTATGTGCAAGGCCTGCTCTGAATCCAAGCCTTCCAAAGGACCAAGTTAGTCTTGCGGAATGGGCTTTGATCAACAAAAGAAGAGGAACACTTGAGGACATCATTGACCCCAACCTCAAGGGAAAAATCAACCCTGAAAGCTTGAAGAAATTTGCAGATGCAGCTGAAAAGTGTTTGTCTGATCATGGACTAGATCGTCCTACCATGAATGATCTTTTGTGGAACCTTGAATTTGCTCTCAACCTGCAAGTGAACCCTGATGGTTCAGCTCACTCTCCAAGGATTGAAGGTGAGTTTGAAGAGGTGAGCTTGAAAGAAAATGACATGGCTGCACATTATAAGAACCTGAGCCTTGGAAGTGATCATGAGCTTAGCCAGGACTCTGGATCCGGTGAGAATTCCGCGGTCATCTTCTCACAAATTGCCAATCCAAAAGGGCGATGA 2589 0.4384 MHTYYCCCCLLLVFCFLNVIPALSAANGGGESLILGCGLEGGGKDADGRQWISDNKYLSGGGDSVTSKASFQDPSLLSEVPYMTARVFKSEATYKFPVLPDKRYWLRLHFYPSVYGSFNPTDSYFSVAANGVTLLSNFSASITCQALSQAYIDREYSLAPLNSDTLSVTFKPRDGGFAFVNGIQLIQMPELFDSAPLVGYDDQTVDAKSMHFQTMFRLNVGGQYISPGQDSGLSRMWYDDTPYLYGGATGVTNQATKNDTIDYKTMPKYIAPSSVYSTSRSMGPNKDVNMGYNLTWIFQVDPNSMYLTRLHFCDYYYSKSNEIVFKIFINNQTAEPEADVIGWTGGKGVPVYKDYVTYVPGGTVGEELWIALHPVPDSKPEFFDALLNGVEIFKLNDTNLSGPNPQPSDMLVEYEAKAKTFQTNKNGHKNIVIGGAAGGAAGFAILAAIGVAVHLQKKKRAPGSYTNTSSWLPLYGNSQTTGTKSSGSGKSGSGNISAMAQGLCRFFSLQEMKQATKNFDESNVIGVGGFGKVYKGVIDNGVKVAIKKANPQSDQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDDEMCLVYDYMDRGTLREHIYKGNKPLDELSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNQGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKDQVSLAEWALINKRRGTLEDIIDPNLKGKINPESLKKFADAAEKCLSDHGLDRPTMNDLLWNLEFALNLQVNPDGSAHSPRIEGEFEEVSLKENDMAAHYKNLSLGSDHELSQDSGSGENSAVIFSQIANPKGR* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1569 862 ProSitePatterns Protein kinases ATP-binding region signature. 525 548 IPR017441 GO:0005524
Lja5g1569 862 Pfam Protein tyrosine and serine/threonine kinase 523 788 IPR001245 GO:0004672|GO:0006468
Lja5g1569 862 Gene3D Phosphorylase Kinase; domain 1 481 594 - -
Lja5g1569 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Lja5g1569 862 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 847 - -
Lja5g1569 862 Gene3D - 211 395 - -
Lja5g1569 862 Gene3D - 35 189 - -
Lja5g1569 862 SMART serkin_6 519 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1569 862 Gene3D Transferase(Phosphotransferase) domain 1 595 803 - -
Lja5g1569 862 ProSiteProfiles Protein kinase domain profile. 519 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1569 862 Pfam Malectin-like domain 36 394 IPR024788 -
Lja5g1569 862 PANTHER OS07G0166700 PROTEIN 23 847 IPR045272 GO:0004714|GO:0006468
Lja5g1569 862 SUPERFAMILY Protein kinase-like (PK-like) 497 794 IPR011009 -
Lja5g1569 862 CDD STKc_IRAK 525 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1569 Lja-Chr5 16629812 16632400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1569 31 862 Receptor kinase-like Gene Family AT3G51550 53.250 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lja5g1569 Malectin_like 1.5e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1569 - - gmx:100791236 1375.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0184 1 1586728 1589319 Lja5g1569 5 16629812 16632400 PCT