Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1563 ATGGTGGCGACAGTGAAAGTGAAGAGCGATAAGCTACGACCATGCATGACATGCCCTCTTTGCCGTAAACTCTTCAAGGATGCTACCACCATCTCTCTCTGCCTTCATACCTTTTGCAGGAAATGCATTTATGAGAAGCTCTCAGATGAGGAGTCTGATTGCTGTCCAGTGTGCAATATTGATCTAGGATGTGTTCCAGTGGAAAAACTCAGGGCAGACCACAATTTGCAAGACATAAGAACAAAATTATTTCCTCTCAAGAGAAGAAAGACCAAGGCCCCAGAAGTTTTGTCTCCAATACCCTTGCCTGCAAAAAGGAAAGAAAGATCACTTTCGTCATTGGCGGTTATTGCTCCCAAAGTTTCAATGCAAACTGGCTTCACAGGAAAGCGGACAAAAACCAGTAACAGAAAAGCTGCCTCATTACGTGGATGTAGTTTTATTCTTGAAGACCCCGTAAAGAAGGAAGAAACAAATAATGAAGATAATAAGGATTCTTCCAAGGCTGGGCAATTTAAGAAGCATAAGCCCAATGAAGACATGGAGAACAGTGTGGAACTTGCAGAAGGGAAGGTTGATCTCTGGACACCATTGAACTGTCTTGTTGAAGCTGCAAACAGAACGAAGTCCTTCAAGGCCAATTCACAAGCTACACCTGTTGCCGAATTAGAGTGTCCAACTACTTCTCATGGAGGACTAGATCAACCTGAAACTACAACCAAAACAGGCCTACCTGCTTTTGCTCAGAATGAATTAAACATTCCTAAATGCAAAATTAAGGATACCGGACATAAAAAATTATTCGGCGTTGACAAGGATGCGAAATGTGTGCCTTCAGGACCAGCAAAGCGAAAAAGGTTGCGTCCTGCTGGTCAGAAAAGAGCTGCAGCATCTGATATGTCTGCCTCAGCCCCAGGCATGCTAAGTGCAACTTGGGGAAAGTGTAACAGAAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGATCAGAAAGGAGATGCCTCCTTGCCACAGATCTCATCTTGTTACTTAAGAATAAGAGATGGTACCGTGCCCGTCTCATTTATACAAAAATACCTTGTGAAGAAACTCAATCTTGCCAGTGAAACAGAGGTGGAAATAATGTGCCAGGGTCAGCCAGTGCTCCCTTCTCTGCAACTGCATAACGTGGTAGATCTCTGGTTCCGGACAGCTTCAACCTCAAAGAGAATGCCAGCATCTGTGGGGTCCTCAGCCAAGGATTTTGTAATGGTTTTATCTTATTGTCGAAAGGCCTAG 1284 0.4369 MVATVKVKSDKLRPCMTCPLCRKLFKDATTISLCLHTFCRKCIYEKLSDEESDCCPVCNIDLGCVPVEKLRADHNLQDIRTKLFPLKRRKTKAPEVLSPIPLPAKRKERSLSSLAVIAPKVSMQTGFTGKRTKTSNRKAASLRGCSFILEDPVKKEETNNEDNKDSSKAGQFKKHKPNEDMENSVELAEGKVDLWTPLNCLVEAANRTKSFKANSQATPVAELECPTTSHGGLDQPETTTKTGLPAFAQNELNIPKCKIKDTGHKKLFGVDKDAKCVPSGPAKRKRLRPAGQKRAAASDMSASAPGMLSATWGKCNRKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKLNLASETEVEIMCQGQPVLPSLQLHNVVDLWFRTASTSKRMPASVGSSAKDFVMVLSYCRKA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1563 427 Gene3D - 310 407 - -
Lja5g1563 427 MobiDBLite consensus disorder prediction 153 183 - -
Lja5g1563 427 ProSiteProfiles Zinc finger RING-type profile. 18 59 IPR001841 -
Lja5g1563 427 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Lja5g1563 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 108 IPR013083 -
Lja5g1563 427 SUPERFAMILY RING/U-box 12 74 - -
Lja5g1563 427 MobiDBLite consensus disorder prediction 278 300 - -
Lja5g1563 427 Pfam Zinc finger, C3HC4 type (RING finger) 18 58 - -
Lja5g1563 427 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 426 - -
Lja5g1563 427 SMART ring_2 18 58 IPR001841 -
Lja5g1563 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 426 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1563 Lja-Chr5 16559729 16564936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1563 1 349 C3H Transcription Factor Family AT2G30580 44.110 9.87e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1563 K16277 - gmx:100783999 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0187 1 1616112 1620084 Lja5g1563 5 16559729 16564936 ECH
Lja5g1563 5 16559729 16564936 Lja5g1563 5 16559729 16564936 ECH