Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1559 ATGACAAGTGTGGTGGTGGATGCAGAGAGAGACAAGTATAGCATGATAAACTTTGAGGAAACTGAGCTGCGACTAGGGATTCCCGGCGCCGGTGAGTCTGGTATCAAGATCGGTGGTGGTAGTGGTGGGAAGAGAGGCTTCTCAGAGACTGATGCTAATGTGGATTTGAAGCTTAATCTTTCTTCTGATTTGGGCTCTGCCTCTTCCTCTGTTTCTTCAACTCTGCCTCCAAACAAAGGCAAGGAGAAAACAGCTGCAACAACACAAGCTAATGACCCGGCAAAACCACCTGCCAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCCTTCAGGAAGAACATCGTGAATGTCCAAAAGAGCAACAACAACGAAGGCGCAGAGAAAAAGGTCACCACCACCACCGCCACAACCACCGCAGGCAACAGCGCAGCAGCAGCAGCATTTGTGAAGGTGAGCATGGACGGTGCACCATATCTACGTAAGGTGGATCTCAAACTGTACAAAAGCTACCAAGAACTGTCAGATGCGCTGGGTAAAATGTTCAGTTCCTTCACCACCATTAATGGAAGTTGTGGGTCTCAAGGCATGATGAAGGACTTCATGAATGAGAGCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTGCCCACTTATCAAGACAAGGATGGTGACTGGATGCTCCTCGGTGATGTGCCCTGGGAAATGTTCGTAGAATCTTGCAAGCGTCTCCGCATAATGAAAGGTTCTGAAGCAATTGGGCTAGCGCCCAAGGGCAGTGGAAAAGTGCAAGAGTAG 801 0.4881 MTSVVVDAERDKYSMINFEETELRLGIPGAGESGIKIGGGSGGKRGFSETDANVDLKLNLSSDLGSASSSVSSTLPPNKGKEKTAATTQANDPAKPPAKAQVVGWPPVRSFRKNIVNVQKSNNNEGAEKKVTTTTATTTAGNSAAAAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTTINGSCGSQGMMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWEMFVESCKRLRIMKGSEAIGLAPKGSGKVQE* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1559 266 MobiDBLite consensus disorder prediction 64 101 - -
Lja5g1559 266 Pfam AUX/IAA family 20 259 IPR033389 -
Lja5g1559 266 ProSiteProfiles PB1 domain profile. 147 250 IPR000270 GO:0005515
Lja5g1559 266 SUPERFAMILY CAD & PB1 domains 144 249 - -
Lja5g1559 266 MobiDBLite consensus disorder prediction 64 91 - -
Lja5g1559 266 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 260 IPR003311 GO:0005634|GO:0006355
Lja5g1559 266 Gene3D - 142 261 - -
Lja5g1559 266 PANTHER AUXIN-INDUCED PROTEIN AUX28 13 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1559 Lja-Chr5 16516272 16519191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1559 119 258 B3 DNA Binding Superfamily AT4G23980 29.286 5.72e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja5g1559 AUX_IAA 3.2e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1559 K14484 - rcu:8269330 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1914 5 23570023 23573349 Lja5g1559 5 16516272 16519191 ECH
Lja5g1559 5 16516272 16519191 Lja5g1559 5 16516272 16519191 ECH