Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1558 ATGGTGTCGGAGGGGTTAGGGGATGATTTCTTGGAGCAGATCTTGGCGGTGCCGGAGGCCTATGGCAGGACGGTGGTGGGCGACGGAGGAGTGTTGCAGCTGGGTTTGAGAGGAGGAGGAGGAGGAATCCCTCTGGGATTGAATTTGGAACAATCTGCGTTTCTCACACACCACCAAGATACACGCTTCATTGACAACAACAACAGCAACAACATTAATAGTAATAACCATCACCACCAACATCACCAGCTTAGTCTCAATAATCATCATCATCACAGTGAAAACTATGCCACCTCTTCATCTTCCTCTTCAATCACTGATCGGGAATCGATGCAGATGAGGGGTTTGTTTCCAACGTTCGGACAATTGCATACTCCTACTCATGCTCCCTCTGTCCGCCCCACTCTGCCACCGCCTTCTCAGCCCCAACTCCACCTCCACCACCAGCACCAACACCATCATCAGCCCCTTCAAAACCAGCAACCAACTCCAGCTTCTAATGCTCATATGCAACATCCACCTGGCATCCGCCCTAGAGTGAGAGCAAGAAGAGGCCAAGCCACTGACCCTCACAGTATAGCTGAGCGGTTACGTCGTGAAAGAATCGCTGAAAGAATGAGGGCATTGCAGGAATTAGTCCCCAGCATCAACAAGTCGGACAGAGCTGCGATGCTTGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTGTTGAGCATGAGTAGACTGGGTGGAGCTGGTGCAGTTGCTCAACTTGTAGCTGATGTTCCCCTTTCAGCAGTGGAGGGGGAAGATATAGAAGGTGGAGCCAGTGAGCAAGCTTGGTCCAAGTGGTCCAACGATGGCACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTCTGTATCATGCCAATATCACTAGCCTCAGCTATTTTTCGCATGCCACAATCAGAAGCATCAACAACAATCAAGCCTGAATCAGACAGCCAGACATAG 1029 0.4956 MVSEGLGDDFLEQILAVPEAYGRTVVGDGGVLQLGLRGGGGGIPLGLNLEQSAFLTHHQDTRFIDNNNSNNINSNNHHHQHHQLSLNNHHHHSENYATSSSSSSITDRESMQMRGLFPTFGQLHTPTHAPSVRPTLPPPSQPQLHLHHQHQHHHQPLQNQQPTPASNAHMQHPPGIRPRVRARRGQATDPHSIAERLRRERIAERMRALQELVPSINKSDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGEDIEGGASEQAWSKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSEASTTIKPESDSQT* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1558 342 Pfam Helix-loop-helix DNA-binding domain 191 235 IPR011598 GO:0046983
Lja5g1558 342 MobiDBLite consensus disorder prediction 65 190 - -
Lja5g1558 342 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 329 - -
Lja5g1558 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 245 IPR036638 GO:0046983
Lja5g1558 342 Gene3D - 181 243 IPR036638 GO:0046983
Lja5g1558 342 MobiDBLite consensus disorder prediction 65 81 - -
Lja5g1558 342 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 5 329 - -
Lja5g1558 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Lja5g1558 342 MobiDBLite consensus disorder prediction 90 110 - -
Lja5g1558 342 SMART finulus 192 241 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1558 Lja-Chr5 16469003 16473941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1558 153 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.016 4.54e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g1558 HLH 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1558 - - vun:114189791 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1917 5 23638794 23643019 Lja5g1558 5 16469003 16473941 ECH
Lja5g1558 5 16469003 16473941 Lja5g1558 5 16469003 16473941 ECH